Name: Bradyrhizobium daqingense LMG 26137
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133740

Type strain:

Species: Bradyrhizobium daqingense

Culture col. no.: LMG 26137, HAMBI 3184, CGMCC 1.10947, CCBAU 15774

NCBI tax ID(s): 993502 (species)

SI-ID 389445

LMG 26137, CGMCC 1.10947, HAMBI 3184

Section

Bradyrhizobium daqingense LMG 26137 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium daqingense**
	Full Scientific Name (LPSN)	Bradyrhizobium daqingense Wang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30354]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #30354]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %95.619

[Ref.: #30354]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30354]			growth	28-37 °C
[Ref.: #30354]			optimum	28 °C

[Ref.: #30354]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30354]			optimum	7
[Ref.: #30354]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30354]

Oxygen tolerance

aerobe

[Ref.: #30354]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.964

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30354]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30354]	acetate ChEBI	+	carbon source
[Ref.: #30354]	arabinose ChEBI	+	carbon source
[Ref.: #30354]	asparagine ChEBI	+	carbon source
[Ref.: #30354]	aspartate ChEBI	+	carbon source
[Ref.: #30354]	formate ChEBI	+	carbon source
[Ref.: #30354]	fructose ChEBI	+	carbon source
[Ref.: #30354]	fucose ChEBI	+	carbon source
[Ref.: #30354]	galactonate ChEBI	+	carbon source
[Ref.: #30354]	galactose ChEBI	+	carbon source
[Ref.: #30354]	galacturonate ChEBI	+	carbon source
[Ref.: #30354]	gluconate ChEBI	+	carbon source
[Ref.: #30354]	glucose ChEBI	+	carbon source
[Ref.: #30354]	glucuronamide ChEBI	+	carbon source
[Ref.: #30354]	glutamate ChEBI	+	carbon source
[Ref.: #30354]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30354]	L-arabitol ChEBI	+	carbon source
[Ref.: #30354]	lactate ChEBI	+	carbon source
[Ref.: #30354]	mannitol ChEBI	+	carbon source
[Ref.: #30354]	mannose ChEBI	+	carbon source
[Ref.: #30354]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30354]	nitrate ChEBI	+	reduction
[Ref.: #30354]	propionate ChEBI	+	carbon source
[Ref.: #30354]	quinate ChEBI	+	carbon source
[Ref.: #30354]	rhamnose ChEBI	+	carbon source
[Ref.: #30354]	succinate ChEBI	+	carbon source
[Ref.: #30354]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30354]	Sample type/isolated from	plant associated
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ231274 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	2827
Soil Samples	5001
Animal Samples	4320
Plant Samples	739
Total Samples	12887

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30354]	Bradyrhizobium daqingense strain CCBAU 15774 16S ribosomal RNA gene, partial sequence	HQ231274	1300	GenBank	993502 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bradyrhizobium daqingense CGMCC 1.10947	GCA_007830205	scaffold	GenBank	993502 tax ID	*
[Ref.: #66792]	Bradyrhizobium daqingense strain CGMCC 1.10947	993502.3	wgs	PATRIC	993502 tax ID	*
[Ref.: #66792]	Bradyrhizobium daqingense CGMCC 1.10947	2596583556	draft	JGI IMG/M	993502 tax ID	*
[Ref.: #66792]	Bradyrhizobium daqingense CCBAU 15774	GCA_021044685	complete	GenBank	993502 tax ID	*
[Ref.: #66792]	Bradyrhizobium daqingense strain CCBAU 15774	993502.5	complete	PATRIC	993502 tax ID	*

[Ref.: #30354]

GC-content

61.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bradyrhizobium daqingense CGMCC 1.10947 NCBI: GCA_007830205.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bradyrhizobium daqingense CCBAU 15774 NCBI: GCA_021044685.1
[Ref.: #69480]	flagellated	no	73.868	no
[Ref.: #69480]	gram-positive	no	97.628	no
[Ref.: #69480]	anaerobic	no	98.033	no
[Ref.: #69480]	aerobic	yes	93.205	yes
[Ref.: #69480]	halophile	no	96.219	yes
[Ref.: #69480]	spore-forming	no	92.14	yes
[Ref.: #69480]	motile	yes	79.853	no
[Ref.: #69480]	thermophile	no	98.968	yes
[Ref.: #69480]	glucose-util	yes	89.794	yes
[Ref.: #69480]	glucose-ferment	no	91.37	no

Availability in culture collections External links

[Ref.: #30354]

Culture collection no.

LMG 26137, HAMBI 3184, CGMCC 1.10947, CCBAU 15774

[Ref.: #91578]

SI-ID 389445

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bradyrhizobium daqingense sp. nov., isolated from soybean nodules.	Wang JY, Wang R, Zhang YM, Liu HC, Chen WF, Wang ET, Sui XH, Chen WX	Int J Syst Evol Microbiol	10.1099/ijs.0.034280-0	2012	*
Phylogeny	Bradyrhizobium cajani sp. nov. isolated from nodules of Cajanus cajan.	Araujo J, Flores-Felix JD, Igual JM, Peix A, Gonzalez-Andres F, Diaz-Alcantara CA, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijsem.0.001932	2017	*
Phylogeny	Bradyrhizobium centrosemae (symbiovar centrosemae) sp. nov., Bradyrhizobium americanum (symbiovar phaseolarum) sp. nov. and a new symbiovar (tropici) of Bradyrhizobium viridifuturi establish symbiosis with Centrosema species native to America.	Ramirez-Bahena MH, Flores-Felix JD, Chahboune R, Toro M, Velazquez E, Peix A	Syst Appl Microbiol	10.1016/j.syapm.2016.06.001	2016	*
Phylogeny	Bradyrhizobium subterraneum sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of groundnuts.	Gronemeyer JL, Chimwamurombe P, Reinhold-Hurek B	Int J Syst Evol Microbiol	10.1099/ijsem.0.000403	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30354

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26694 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91578

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389445.1 )

#26694

IJSEM 616 2013 ( DOI 10.1099/ijs.0.034280-0 , PubMed 22544787 )

* These data were automatically processed and therefore are not curated

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Bradyrhizobium daqingense CGMCC 1.10947

Bradyrhizobium daqingense CCBAU 15774

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