Name: Sphingobacterium hotanense XH4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133690

Type strain:

Species: Sphingobacterium hotanense

Strain Designation: XH4

Culture col. no.: NRRL B-59204, CCTCC AB 209007

NCBI tax ID(s): 649196 (species)

Other strains from Sphingobacterium hotanense

S. hotanense CCUG 31377

Section

Sphingobacterium hotanense XH4 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium hotanense**
	Full Scientific Name (LPSN)	Sphingobacterium hotanense Xiao et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30165]	Gram stain	negative

[Ref.: #30165]	Cell length	1.25 µm

[Ref.: #30165]	Cell width	0.8 µm

[Ref.: #30165]	Cell shape	rod-shaped

[Ref.: #30165]	Motility	no

[Ref.: #30165]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30165]			growth	20-45 °C
[Ref.: #30165]			optimum	37 °C

[Ref.: #30165]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30165]			optimum	7.5
[Ref.: #30165]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30165]

Oxygen tolerance

aerobe

[Ref.: #30165]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30165]		NaCl		growth	0-3	%
[Ref.: #30165]		NaCl		optimum	2	%

[Ref.: #30165]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30165]	glucose ChEBI	+	carbon source
[Ref.: #30165]	histidine ChEBI	+	carbon source
[Ref.: #30165]	maltose ChEBI	+	carbon source
[Ref.: #30165]	melibiose ChEBI	+	carbon source
[Ref.: #30165]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30165]	nitrate ChEBI	+	reduction
[Ref.: #30165]	proline ChEBI	+	carbon source
[Ref.: #30165]	rhamnose ChEBI	+	carbon source
[Ref.: #30165]	ribose ChEBI	+	carbon source
[Ref.: #30165]	salicin ChEBI	+	carbon source
[Ref.: #30165]	sodium citrate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30165]	acid phosphatase	+	3.1.3.2
[Ref.: #30165]	alkaline phosphatase	+	3.1.3.1
[Ref.: #30165]	catalase	+	1.11.1.6
[Ref.: #30165]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #30165]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ859899 (>99% sequence identity) for Sphingobacterium hotanense subclade from Microbeatlas

Aquatic Samples	1604
Soil Samples	1296
Animal Samples	5042
Plant Samples	529
Total Samples	8471

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #30165]	Sphingobacterium hotanense strain XH4 16S ribosomal RNA gene, partial sequence	FJ859899	1419	GenBank	649196 tax ID

[Ref.: #30165]

GC-content

41.2 mol%

Availability in culture collections External links

[Ref.: #30165]

Culture collection no.

NRRL B-59204, CCTCC AB 209007

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense.	Xiao T, He X, Cheng G, Kuang H, Ma X, Yusup K, Hamdun M, Gulsimay A, Fang C, Rahman E	Int J Syst Evol Microbiol	10.1099/ijs.0.030155-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30165

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26515 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26515

IJSEM 815 2013 ( DOI 10.1099/ijs.0.030155-0 , PubMed 22611196 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sphingobacterium hotanense in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF