Name: Saccharospirillum aestuarii KCTC 22684
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133634

Type strain:

Species: Saccharospirillum aestuarii

Culture col. no.: KCTC 22684, KCCM 42930, NBRC 105825, IMCC 4453, UCCCB35

Strain history: Choi A. Inha University

NCBI tax ID(s): 656894 (species)

Section

Saccharospirillum aestuarii KCTC 22684 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Saccharospirillaceae*
	Genus	*Saccharospirillum*
	Species	**Saccharospirillum aestuarii**
	Full Scientific Name (LPSN)	Saccharospirillum aestuarii Choi et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29862]	Gram stain	negative

[Ref.: #29862]	Cell length	2 µm

[Ref.: #29862]	Cell width	0.75 µm

[Ref.: #29862]	Cell shape	rod-shaped

[Ref.: #29862]	Motility	no

[Ref.: #29862]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29862]	growth	10-42 °C
[Ref.: #29862]	optimum	25 °C
[Ref.: #67772]	minimum	10 °C
[Ref.: #67772]	optimum	25 °C
[Ref.: #67772]	maximum	42 °C

[Ref.: #29862]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	thermophilic

		pH
[Ref.: #67772]	maximum	12.0
[Ref.: #67772]	minimum	5.0
[Ref.: #29862]	optimum	8
[Ref.: #67772]	optimum	8.0
[Ref.: #29862]	growth	5.0-12.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29862]

Oxygen tolerance

facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29862]		NaCl		growth	0.5-10	%
[Ref.: #29862]		NaCl		optimum	2.0-5.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29862]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29862]	cellobiose ChEBI	+	carbon source
[Ref.: #29862]	esculin ChEBI	+	hydrolysis
[Ref.: #29862]	fucose ChEBI	+	carbon source
[Ref.: #29862]	glucose ChEBI	+	carbon source
[Ref.: #29862]	glycerol ChEBI	+	carbon source
[Ref.: #29862]	glycogen ChEBI	+	carbon source
[Ref.: #29862]	L-arabitol ChEBI	+	carbon source
[Ref.: #29862]	maltose ChEBI	+	carbon source
[Ref.: #29862]	mannitol ChEBI	+	carbon source
[Ref.: #29862]	melibiose ChEBI	+	carbon source
[Ref.: #29862]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29862]	nitrate ChEBI	+	reduction
[Ref.: #29862]	rhamnose ChEBI	+	carbon source
[Ref.: #29862]	sorbitol ChEBI	+	carbon source
[Ref.: #29862]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29862]	catalase	+	1.11.1.6
[Ref.: #29862]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29862]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29862]	Sample type/isolated from	marine sediment

[Ref.: #67772]	Sample type/isolated from	Tidal flat sediment of the Yellow Sea
[Ref.: #67772]	Geographic location (country and/or sea, region)	Incheon
[Ref.: #67772]	Country	Republic of Korea
[Ref.: #67772]	Country ISO 3 Code	KOR
[Ref.: #67772]	Continent	Asia
[Ref.: #67772]	Geographic location	37.6019°/126.4860°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ250189 (>99% sequence identity) for Saccharospirillum from Microbeatlas

Aquatic Samples	458
Soil Samples	55
Animal Samples	7
Plant Samples	9
Total Samples	529

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67772]

Biosafety level

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29862]	Saccharospirillum aestuarii strain IMCC4453 16S ribosomal RNA gene, partial sequence	GQ250189	1457	GenBank	656894 tax ID

[Ref.: #29862]

GC-content

56.5 mol%

Availability in culture collections External links

[Ref.: #29862]

Culture collection no.

KCTC 22684, KCCM 42930, NBRC 105825, IMCC 4453, UCCCB35

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharospirillum alexandrii sp. nov., isolated from the toxigenic marine dinoflagellate Alexandrium catenella LZT09.	Yang Q, Jiang Z, Zhou X, Xie Z, Wang Y, Wang D, Feng L, Yang G, Ge Y, Zhang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003832	2020	*
Phylogeny	Saccharospirillum mangrovi sp. nov., a bacterium isolated from mangrove sediment.	Zhang W, Yuan Y, Su D, Ding L, Yan X, Wu M, Epstein SS, He S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002899	2018	*
Phylogeny	Saccharospirillum aestuarii sp. nov., isolated from tidal flat sediment, and an emended description of the genus Saccharospirillum.	Choi A, Oh HM, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.022996-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29862

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26236 (see below)

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26236

IJSEM 487 2011 ( DOI 10.1099/ijs.0.022996-0 , PubMed 20363931 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Saccharospirillum aestuarii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF