Name: Gangjinia marincola GJ16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133621

Type strain:

Species: Gangjinia marincola

Strain Designation: GJ16

Culture col. no.: KCTC 22649, JCM 16082

Strain history: <- DH Lee, Sunchon Natl. Univ.

NCBI tax ID(s): 578463 (species)

Section

Gangjinia marincola GJ16 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Gangjinia*
	Species	**Gangjinia marincola**
	Full Scientific Name (LPSN)	Gangjinia marincola Lee et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29808]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29808]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

[Ref.: #29808]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29808]	growth	20-30 °C
[Ref.: #29808]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #29808]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29808]			optimum	7.5
[Ref.: #29808]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29808]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29808]		NaCl		growth	02-04	%
[Ref.: #29808]		NaCl		optimum	3	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29808]	acetate ChEBI	+	carbon source
[Ref.: #29808]	alanine ChEBI	+	carbon source
[Ref.: #29808]	dextrin ChEBI	+	carbon source
[Ref.: #29808]	glutamate ChEBI	+	carbon source
[Ref.: #29808]	glycogen ChEBI	+	carbon source
[Ref.: #29808]	leucine ChEBI	+	carbon source
[Ref.: #29808]	melibiose ChEBI	+	carbon source
[Ref.: #29808]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29808]	ornithine ChEBI	+	carbon source
[Ref.: #29808]	phenylalanine ChEBI	+	carbon source
[Ref.: #29808]	phenylethylamine ChEBI	+	carbon source
[Ref.: #29808]	proline ChEBI	+	carbon source
[Ref.: #29808]	propionate ChEBI	+	carbon source
[Ref.: #29808]	putrescine ChEBI	+	carbon source
[Ref.: #29808]	raffinose ChEBI	+	carbon source
[Ref.: #29808]	rhamnose ChEBI	+	carbon source
[Ref.: #29808]	thymidine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29808]	acid phosphatase	+	3.1.3.2
[Ref.: #29808]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29808]	catalase	+	1.11.1.6
[Ref.: #29808]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29808]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Coastal seawater of Gangjin Bay
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gangjin Bay, the southernmost part of the Korean peninsula
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ463655 (>99% sequence identity) for Gangjinia marincola subclade from Microbeatlas

Aquatic Samples	1039
Soil Samples	27
Animal Samples	55
Plant Samples	8
Total Samples	1129

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29808]	Gangjinia marincola strain GJ16 16S ribosomal RNA gene, partial sequence	FJ463655	1479	GenBank	578463 tax ID

[Ref.: #67770]	GC-content	39.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	39.4 mol%

Availability in culture collections External links

[Ref.: #29808]

Culture collection no.

KCTC 22649, JCM 16082

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gangjinia marincola gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae.	Lee DH, Moon SR, Park YH, Lee YS, Jung JS, Kim JH, Kim H, Kahng HY	Int J Syst Evol Microbiol	10.1099/ijs.0.021592-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29808

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26185 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26185

IJSEM 325 2011 ( DOI 10.1099/ijs.0.021592-0 , PubMed 20228204 )

* These data were automatically processed and therefore are not curated

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