Name: Mucilaginibacter gossypiicola Gh-48
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133596

Type strain:

Species: Mucilaginibacter gossypiicola

Strain Designation: Gh-48

Culture col. no.: NCIMB 14471, KCTC 22379

Strain history: <- M Madhaiyan, Tamilnadu Agri. Univ., India

NCBI tax ID(s): 551995 (species)

Section

Mucilaginibacter gossypiicola Gh-48 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter gossypiicola**
	Full Scientific Name (LPSN)	Mucilaginibacter gossypiicola Madhaiyan et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29685]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #29685]	Cell length	0.5-0.8 µm

[Ref.: #29685]	Cell width	0.2-0.3 µm

[Ref.: #29685]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29685]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #29685]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29685]	growth	20-30 °C
[Ref.: #29685]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #29685]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29685]			optimum	06-07
[Ref.: #29685]			growth	02-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29685]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29685]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.929

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29685]		NaCl		growth	0.5	%
[Ref.: #29685]		NaCl		optimum	0.5	%

[Ref.: #29685]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29685]	acetate ChEBI	+	carbon source
[Ref.: #29685]	alanine ChEBI	+	carbon source
[Ref.: #29685]	cellobiose ChEBI	+	carbon source
[Ref.: #29685]	dextrin ChEBI	+	carbon source
[Ref.: #29685]	esculin ChEBI	+	hydrolysis
[Ref.: #29685]	ethanol ChEBI	+	carbon source
[Ref.: #29685]	fucose ChEBI	+	carbon source
[Ref.: #29685]	galactose ChEBI	+	carbon source
[Ref.: #29685]	gluconate ChEBI	+	carbon source
[Ref.: #29685]	glucose ChEBI	+	carbon source
[Ref.: #29685]	glycerol ChEBI	+	carbon source
[Ref.: #29685]	glycogen ChEBI	+	carbon source
[Ref.: #29685]	L-arabitol ChEBI	+	carbon source
[Ref.: #29685]	lactose ChEBI	+	carbon source
[Ref.: #29685]	maltose ChEBI	+	carbon source
[Ref.: #29685]	mannitol ChEBI	+	carbon source
[Ref.: #29685]	mannose ChEBI	+	carbon source
[Ref.: #29685]	melibiose ChEBI	+	carbon source
[Ref.: #29685]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29685]	nitrate ChEBI	+	reduction
[Ref.: #29685]	ornithine ChEBI	+	carbon source
[Ref.: #29685]	proline ChEBI	+	carbon source
[Ref.: #29685]	raffinose ChEBI	+	carbon source
[Ref.: #29685]	sorbitol ChEBI	+	carbon source
[Ref.: #29685]	succinate ChEBI	+	carbon source
[Ref.: #29685]	sucrose ChEBI	+	carbon source
[Ref.: #29685]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29685]		catalase	+	1.11.1.6
[Ref.: #29685]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29685]	Sample type/isolated from	soil

[Ref.: #67771]	Sample type/isolated from	From rhizosphere soil ocotton, `Gossipium hirsutum` L. â€˜MCU-12â€™
[Ref.: #67771]	Geographic location (country and/or sea, region)	the flowering stage from an experimental field at the Cotton Breeding Station, TNAU
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29685]	Mucilaginibacter gossypiicola strain Gh-48 16S ribosomal RNA gene, partial sequence	EU672805	1396	GenBank	551995 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mucilaginibacter gossypiicola Gh-48	GCA_900110105	scaffold	GenBank	551995 tax ID	*
[Ref.: #66792]	Mucilaginibacter gossypiicola Gh-48	2651870109	draft	JGI IMG/M	551995 tax ID	*

[Ref.: #29685]

GC-content

44.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mucilaginibacter gossypiicola Gh-48 NCBI: GCA_900110105.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter gossypiicola Gh-48 NCBI: GCA_900110105.1
[Ref.: #69480]	glucose-ferment	no	88.877	no
[Ref.: #69480]	motile	no	89.213	yes
[Ref.: #69480]	flagellated	no	96.406	yes
[Ref.: #69480]	gram-positive	no	96.755	yes
[Ref.: #69480]	anaerobic	no	99.401	yes
[Ref.: #69480]	aerobic	yes	86.832	yes
[Ref.: #69480]	halophile	no	97.164	yes
[Ref.: #69480]	spore-forming	no	92.196	yes
[Ref.: #69480]	thermophile	no	99.453	yes
[Ref.: #69480]	glucose-util	yes	87.004	no

Availability in culture collections External links

[Ref.: #29685]

Culture collection no.

NCIMB 14471, KCTC 22379

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter endophyticus sp. nov., an endophytic polysaccharide-producing bacterium isolated from a stem of Miscanthus sinensis.	Zhang Z, Sun F, Chen Y, Yao L, Chen Z, Tian W	Antonie Van Leeuwenhoek	10.1007/s10482-019-01242-2	2019	*
Phylogeny	Mucilaginibacter rubeus sp. nov., isolated from rhizosphere soil.	Wei JC, Sun LN, Yuan ZX, Hou XT, Yang ED, Cao YY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002101	2017	*
Phylogeny	Mucilaginibacter gossypii sp. nov. and Mucilaginibacter gossypiicola sp. nov., plant-growth-promoting bacteria isolated from cotton rhizosphere soils.	Madhaiyan M, Poonguzhali S, Lee JS, Senthilkumar M, Lee KC, Sundaram S	Int J Syst Evol Microbiol	10.1099/ijs.0.018713-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29685

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26070 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26070

IJSEM 2451 2010 ( DOI 10.1099/ijs.0.018713-0 , PubMed 19946048 )

* These data were automatically processed and therefore are not curated

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