Name: Paraburkholderia acidipaludis SA33
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133586

Type strain:

Species: Paraburkholderia acidipaludis

Strain Designation: SA33

Culture col. no.: NBRC 101816, VTCC D6-6

NCBI tax ID(s): 1218074 (strain), 660537 (species)

Special Collections

Literature strains

Section

Paraburkholderia acidipaludis SA33 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Chinese water chestnut growing in acidic swamps.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia acidipaludis**
	Full Scientific Name (LPSN)	Paraburkholderia acidipaludis (Aizawa et al. 2010) Sawana et al. 2017

Synonym

Burkholderia acidipaludis

Information on morphological and physiological properties Morphology

[Ref.: #29666]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #29666]	Cell length	1.3-1.7 µm

[Ref.: #29666]	Cell width	0.6-0.7 µm

[Ref.: #29666]	Cell shape	rod-shaped

[Ref.: #29666]	Motility	no

[Ref.: #29666]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29666]			growth	17-37 °C
[Ref.: #29666]			optimum	28-32 °C

	pH	Kind of pH		pH
[Ref.: #29666]			optimum	04-07
[Ref.: #29666]			growth	03-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29666]

Oxygen tolerance

aerobe

[Ref.: #29666]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.69
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #29666]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29666]	arabinose ChEBI	+	carbon source
[Ref.: #29666]	asparagine ChEBI	+	carbon source
[Ref.: #29666]	aspartate ChEBI	+	carbon source
[Ref.: #29666]	fructose ChEBI	+	carbon source
[Ref.: #29666]	fucose ChEBI	+	carbon source
[Ref.: #29666]	galactose ChEBI	+	carbon source
[Ref.: #29666]	gluconate ChEBI	+	carbon source
[Ref.: #29666]	glucose ChEBI	+	carbon source
[Ref.: #29666]	glutamate ChEBI	+	carbon source
[Ref.: #29666]	histidine ChEBI	+	carbon source
[Ref.: #29666]	L-arabitol ChEBI	+	carbon source
[Ref.: #29666]	lactate ChEBI	+	carbon source
[Ref.: #29666]	mannitol ChEBI	+	carbon source
[Ref.: #29666]	mannose ChEBI	+	carbon source
[Ref.: #29666]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29666]	nitrate ChEBI	+	reduction
[Ref.: #29666]	phenylalanine ChEBI	+	carbon source
[Ref.: #29666]	proline ChEBI	+	carbon source
[Ref.: #29666]	rhamnose ChEBI	+	carbon source
[Ref.: #29666]	ribitol ChEBI	+	carbon source
[Ref.: #29666]	sorbitol ChEBI	+	carbon source
[Ref.: #29666]	succinate ChEBI	+	carbon source
[Ref.: #29666]	threonine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29666]	acid phosphatase	+	3.1.3.2
[Ref.: #29666]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29666]	catalase	+	1.11.1.6
[Ref.: #29666]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29666]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29666]	Sample type/isolated from	Chinese water chestnut growing in acidic swamps
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB513180 (>99% sequence identity) for Paraburkholderia acidipaludis subclade from Microbeatlas

Aquatic Samples	30
Soil Samples	156
Animal Samples	137
Plant Samples	11
Total Samples	334

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29666]	Burkholderia acidipaludis gene for 16S ribosomal RNA, partial sequence, strain: SA33	AB513180	1495	GenBank ENA	1218074 tax ID
[Ref.: #124043]	Burkholderia acidipaludis gene for 16S ribosomal RNA, partial sequence, strain: NBRC 101816.	AB537485	1456	GenBank ENA	1218074 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraburkholderia acidipaludis NBRC 101816	GCA_000684975	contig	GenBank ENA	1218074 tax ID	*
[Ref.: #66792]	Burkholderia acidipaludis NBRC 101816	1218074.4	wgs	PATRIC	1218074 tax ID	*
[Ref.: #66792]	Paraburkholderia acidipaludis NBRC 101816	2582580767	draft	JGI IMG/M	1218074 tax ID	*

[Ref.: #29666]

GC-content

64 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Burkholderia acidipaludis NBRC 101816 PATRIC: 1218074.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Burkholderia acidipaludis NBRC 101816 PATRIC: 1218074.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.08	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.69	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.205	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.986	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.753	no

Availability in culture collections External links

[Ref.: #29666]

Culture collection no.

NBRC 101816, VTCC D6-6

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface.	Gu JY, Zang SG, Sheng XF, He LY, Huang Z, Wang Q	Int J Syst Evol Microbiol	10.1099/ijs.0.000059	2015	*
Phylogeny	Burkholderia monticola sp. nov., isolated from mountain soil.	Baek I, Seo B, Lee I, Yi H, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.066001-0	2014	*
Phylogeny	Burkholderia acidipaludis sp. nov., aluminum-tolerant bacteria isolated from Chinese water chestnut (Eleocharis dulcis) growing in highly acidic swamps in South-East Asia.	Aizawa T, Bao Ve N, Vijarnsorn P, Nakajima M, Sunairi M	Int J Syst Evol Microbiol	10.1099/ijs.0.018283-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29666

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26053 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#26053

IJSEM 2036 2010 ( DOI 10.1099/ijs.0.018283-0 , PubMed 19819996 )

* These data were automatically processed and therefore are not curated

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Burkholderia acidipaludis NBRC 101816

Burkholderia acidipaludis NBRC 101816

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