Name: Pseudidiomarina aestuarii KYW314
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133584

Type strain:

Species: Pseudidiomarina aestuarii

Strain Designation: KYW314

Culture col. no.: KCTC 22740, JCM 16344

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 624146 (species)

Special Collections

Section

Pseudidiomarina aestuarii KYW314 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from shallow coastal seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina aestuarii**
	Full Scientific Name (LPSN)	Pseudidiomarina aestuarii Park et al. 2010

Synonym

Idiomarina aestuarii

Information on morphological and physiological properties Morphology

[Ref.: #29656]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.994

[Ref.: #29656]	Cell length	0.7-1.4 µm

[Ref.: #29656]	Cell width	0.3 µm

[Ref.: #29656]	Cell shape	rod-shaped

[Ref.: #29656]	Motility	no

[Ref.: #29656]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29656]	growth	10-37 °C
[Ref.: #29656]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29656]			optimum	7
[Ref.: #29656]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29656]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.218

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29656]		NaCl		growth	01-10	%
[Ref.: #29656]		NaCl		optimum	3	%

[Ref.: #29656]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29656]	acetate ChEBI	+	carbon source
[Ref.: #29656]	citrate ChEBI	+	carbon source
[Ref.: #29656]	esculin ChEBI	+	hydrolysis
[Ref.: #29656]	galactose ChEBI	+	carbon source
[Ref.: #29656]	glucose ChEBI	+	carbon source
[Ref.: #29656]	lactose ChEBI	+	carbon source
[Ref.: #29656]	mannose ChEBI	+	carbon source
[Ref.: #29656]	propionate ChEBI	+	carbon source
[Ref.: #29656]	rhamnose ChEBI	+	carbon source
[Ref.: #29656]	sorbitol ChEBI	+	carbon source
[Ref.: #29656]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29656]		catalase	+	1.11.1.6
[Ref.: #29656]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29656]	Sample type/isolated from	shallow coastal seawater

[Ref.: #67770]	Sample type/isolated from	Seawater

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Gwangyang bay
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ768737 (>99% sequence identity) for Pseudidiomarina aestuarii subclade from Microbeatlas

Aquatic Samples	605
Soil Samples	95
Animal Samples	83
Plant Samples	1
Total Samples	784

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29656]	Pseudidiomarina sp. KYW314 16S ribosomal RNA gene, partial sequence	FJ768737	1477	GenBank ENA	624146 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudidiomarina aestuarii KYW314	GCA_003987355	contig	GenBank ENA	624146 tax ID

[Ref.: #29656]	GC-content	56.4 mol%
[Ref.: #67770]	GC-content	49.1 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	56.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudidiomarina aestuarii KYW314 NCBI: GCA_003987355.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.187	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.19	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.218	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.426	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	51.738	no

Availability in culture collections External links

[Ref.: #29656]

Culture collection no.

KCTC 22740, JCM 16344

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina halophila sp. nov., isolated from a solar saltern sediment.	Lee JC, Kim YS, Yun BS, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.000094	2015	*
Phylogeny	Idiomarina planktonica sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Liu HC, Wang F, Song L, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.065938-0	2014	*
Phylogeny	Idiomarina xiamenensis sp. nov., isolated from surface seawater, and proposal to transfer Pseudidiomarina aestuarii to the genus Idiomarina as Idiomarina aestuarii comb. nov.	Wang L, Lai Q, Fu Y, Chen H, Wang W, Wang J, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.022970-0	2010	*
Phylogeny	Pseudidiomarina aestuarii sp. nov., a marine bacterium isolated from shallow coastal seawater.	Park SC, Lim CH, Baik KS, Lee KH, Lee JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.018051-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29656

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26044 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26044

IJSEM 2071 2010 ( DOI 10.1099/ijs.0.018051-0 , PubMed 19837733 )

* These data were automatically processed and therefore are not curated

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