Pseudidiomarina aestuarii (KCTC 22740, JCM 16344, KYW314)

Name: Pseudidiomarina aestuarii (KCTC 22740, JCM 16344, KYW314)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133584

Type strain

Strain Designation KYW314

Culture col. no. KCTC 22740 JCM 16344 KYW314

NCBI tax ID(s) 624146

Special Collections JCM KCTC Literature strains

Links

Pseudidiomarina aestuarii KYW314 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from shallow coastal seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27856

KCTC 22740,JCM 16344

@ref 20215

Last LPSN update 2025-12-16 10:01:49

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Pseudidiomarina

Species Pseudidiomarina aestuarii

Full scientific name Pseudidiomarina aestuarii Park et al. 2010

Synonyms (1)

Idiomarina aestuarii

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29656	negative	0.7-1.4 µm	0.3 µm	rod-shaped
67771	negative
125438	negative				98.994

Pigmentation

29656

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29656	positive	growth	10-37
29656	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29656	positive	optimum	7
29656	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29656	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125438		93.218

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29656	NaCl	positive	growth	01-10 %
29656	NaCl	positive	optimum	3 %

Observation

29656

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29656	30089 ChEBI	acetate	+	carbon source
29656	16947 ChEBI	citrate	+	carbon source
29656	4853 ChEBI	esculin	+	hydrolysis
29656	28260 ChEBI	galactose	+	carbon source
29656	17234 ChEBI	glucose	+	carbon source
29656	17716 ChEBI	lactose	+	carbon source
29656	37684 ChEBI	mannose	+	carbon source
29656	17272 ChEBI	propionate	+	carbon source
29656	26546 ChEBI	rhamnose	+	carbon source
29656	30911 ChEBI	sorbitol	+	carbon source
29656	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29656	catalase	+	1.11.1.6
29656	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
29656	shallow coastal seawater
67770	Seawater
67771	From seawater	Gwangyang bay	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ768737 (>99% sequence identity) for Pseudidiomarina aestuarii subclade from Microbeatlas

Aquatic Samples	605
Soil Samples	95
Animal Samples	83
Plant Samples	1
Total Samples	784

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM398735v1 assembly for Pseudidiomarina aestuarii KYW314	contig	GCA_003987355	624146.18	2989366293	624146	76.23

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29656	Pseudidiomarina sp. KYW314 16S ribosomal RNA gene, partial sequence	FJ768737	1477		624146

GC content

@ref	GC-content (mol%)	Method
29656	56.4
67770	49.1	genome sequence analysis
67770	56.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudidiomarina aestuarii KYW314
NCBI: GCA_003987355.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.99	yes
125438	anaerobic	anaerobicⓘ	no	98.19	no
125438	aerobic	aerobicⓘ	yes	83.19	yes
125438	spore-forming	spore-formingⓘ	no	93.22	no
125438	thermophilic	thermophileⓘ	no	97.43	no
125438	flagellated	motile2+ⓘ	no	51.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina halophila sp. nov., isolated from a solar saltern sediment.	Lee JC, Kim YS, Yun BS, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.000094	2015
Phylogeny	Idiomarina planktonica sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Liu HC, Wang F, Song L, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.065938-0	2014
Phylogeny	Idiomarina xiamenensis sp. nov., isolated from surface seawater, and proposal to transfer Pseudidiomarina aestuarii to the genus Idiomarina as Idiomarina aestuarii comb. nov.	Wang L, Lai Q, Fu Y, Chen H, Wang W, Wang J, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.022970-0	2010
Phylogeny	Pseudidiomarina aestuarii sp. nov., a marine bacterium isolated from shallow coastal seawater.	Park SC, Lim CH, Baik KS, Lee KH, Lee JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.018051-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26044	IJSEM 2071 2010 ( DOI 10.1099/ijs.0.018051-0 , PubMed 19837733 )
#29656	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26044
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudidiomarina aestuarii (KCTC 22740, JCM 16344, KYW314)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003987355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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