Name: Kangiella japonica NRIC 0764
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133576

Type strain:

Species: Kangiella japonica

Culture col. no.: NRIC 0764, JCM 16211, KMM 3899

Strain history: N. Tanaka <-- L. A. Romanenko KMM 3899.

NCBI tax ID(s): 647384 (species)

Section

Kangiella japonica NRIC 0764 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Kangiellaceae*
	Genus	*Kangiella*
	Species	**Kangiella japonica**
	Full Scientific Name (LPSN)	Kangiella japonica Romanenko et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29619]	Gram stain	negative

[Ref.: #29619]	Cell length	2.5-3.5 µm

[Ref.: #29619]	Cell shape	rod-shaped

[Ref.: #29619]	Motility	no

[Ref.: #29619]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29619]	growth	04-42 °C
[Ref.: #29619]	optimum	28-35 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #29619]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29619]			optimum	08-10
[Ref.: #29619]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29619]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29619]		NaCl		growth	0.5-13	%
[Ref.: #29619]		NaCl		optimum	02-03	%

[Ref.: #29619]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29619]	arabinose ChEBI	+	carbon source
[Ref.: #29619]	cellobiose ChEBI	+	carbon source
[Ref.: #29619]	galactose ChEBI	+	carbon source
[Ref.: #29619]	glucose ChEBI	+	carbon source
[Ref.: #29619]	lactose ChEBI	+	carbon source
[Ref.: #29619]	maltose ChEBI	+	carbon source
[Ref.: #29619]	mannitol ChEBI	+	carbon source
[Ref.: #29619]	mannose ChEBI	+	carbon source
[Ref.: #29619]	rhamnose ChEBI	+	carbon source
[Ref.: #29619]	sorbitol ChEBI	+	carbon source
[Ref.: #29619]	sucrose ChEBI	+	carbon source
[Ref.: #29619]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29619]		catalase	+	1.11.1.6
[Ref.: #29619]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29619]	Sample type/isolated from	marine sediment

[Ref.: #67770]	Sample type/isolated from	Offshore sediment of the Sea of Japan
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB505051 (>99% sequence identity) for Kangiella japonica from Microbeatlas

Aquatic Samples	197
Soil Samples	4
Animal Samples	9
Plant Samples	1
Total Samples	211

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29619]	Kangiella japonica gene for 16S ribosomal RNA, partial sequence, strain: KMM 3899	AB505051	1511	GenBank	647384 tax ID

[Ref.: #29619]	GC-content	45.8 mol%
[Ref.: #67770]	GC-content	45.8 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #29619]

Culture collection no.

NRIC 0764, JCM 16211, KMM 3899

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kangiella geojedonensis sp. nov., isolated from seawater.	Yoon JH, Kang SJ, Lee SY, Lee JS, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.029314-0	2011	*
Phylogeny	Kangiella spongicola sp. nov., a halophilic marine bacterium isolated from the sponge Chondrilla nucula.	Ahn J, Park JW, McConnell JA, Ahn YB, Haggblom MM	Int J Syst Evol Microbiol	10.1099/ijs.0.021733-0	2010	*
Phylogeny	Kangiella japonica sp. nov., isolated from a marine environment.	Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.017087-0	2009	*
Phylogeny	Kangiella sediminilitoris sp. nov., isolated from a tidal flat sediment.	Lee SY, Park S, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.040691-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29619

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26009 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26009

IJSEM 2583 2010 ( DOI 10.1099/ijs.0.017087-0 , PubMed 20023058 )

* These data were automatically processed and therefore are not curated

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