Name: Agaricicola taiwanensis CC-SBABM117
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133571

Type strain:

Species: Agaricicola taiwanensis

Strain Designation: CC-SBABM117, SBABM117

Culture col. no.: BCRC 17964, CCM 7684, DSM 22517

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; CC-SBABM117

NCBI tax ID(s): 591372 (species)

SI-ID 370647

CCM7684, BCRC 17964

Other strains from Agaricicola taiwanensis

A. taiwanensis

Section

Agaricicola taiwanensis CC-SBABM117 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from stripe of edible mushroom.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Agaricicola*
	Species	**Agaricicola taiwanensis**
	Full Scientific Name (LPSN)	Agaricicola taiwanensis Chu et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29588]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.974

[Ref.: #29588]	Cell length	0.8-1 µm

[Ref.: #29588]	Cell width	0.5 µm

[Ref.: #29588]	Cell shape	rod-shaped

[Ref.: #29588]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.687

[Ref.: #29588]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42638]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #42638]

Culture medium growth

[Ref.: #42638]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42638]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #29588]	growth	20-40 °C
[Ref.: #29588]	optimum	30-35 °C
[Ref.: #42638]	growth	28 °C

[Ref.: #29588]	Temperature range	mesophilic
[Ref.: #42638]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29588]			optimum	7
[Ref.: #29588]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29588]

Oxygen tolerance

aerobe

[Ref.: #29588]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29588]		NaCl		growth	01-04	%
[Ref.: #29588]		NaCl		optimum	02-03	%

[Ref.: #29588]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29588]	acetate ChEBI	+	carbon source
[Ref.: #29588]	arabinose ChEBI	+	carbon source
[Ref.: #29588]	galactose ChEBI	+	carbon source
[Ref.: #29588]	galacturonate ChEBI	+	carbon source
[Ref.: #29588]	glucose ChEBI	+	carbon source
[Ref.: #29588]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29588]	proline ChEBI	+	carbon source
[Ref.: #29588]	propionate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29588]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29588]	Sample type/isolated from	stripe of edible mushroom

[Ref.: #42638]	Sample type/isolated from	Stipe of the edible mushroom Agaricus blazei Murrill
[Ref.: #42638]	Host species	Agaricus blazei
[Ref.: #42638]	Country	Taiwan
[Ref.: #42638]	Country ISO 3 Code	TWN
[Ref.: #42638]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Fungi

#Mushroom

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ594057 (>99% sequence identity) for Agaricicola taiwanensis subclade from Microbeatlas

Aquatic Samples	601
Soil Samples	2560
Animal Samples	1496
Plant Samples	1053
Total Samples	5710

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42638]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29588]	Rhodobacteraceae bacterium CC-SBABM117 16S ribosomal RNA gene, partial sequence	FJ594057	1436	GenBank	591372 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agaricicola taiwanensis CCM 7684	GCA_014635245	contig	GenBank	591372 tax ID	*
[Ref.: #66792]	Agaricicola taiwanensis strain CCM 7684	591372.3	wgs	PATRIC	591372 tax ID	*

[Ref.: #29588]

GC-content

62.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Agaricicola taiwanensis strain CCM 7684 PATRIC: 591372.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Agaricicola taiwanensis strain CCM 7684 PATRIC: 591372.3
[Ref.: #69480]	gram-positive	no	98.707	yes
[Ref.: #69480]	anaerobic	no	97.672	yes
[Ref.: #69480]	halophile	no	81.358	no
[Ref.: #69480]	spore-forming	no	96.771	yes
[Ref.: #69480]	glucose-util	yes	81.416	yes
[Ref.: #69480]	thermophile	no	96.642	no
[Ref.: #69480]	aerobic	yes	85.687	yes
[Ref.: #69480]	motile	yes	86.792	yes
[Ref.: #69480]	flagellated	no	70.373	no
[Ref.: #69480]	glucose-ferment	no	92.363	no

Availability in culture collections External links

[Ref.: #42638]

Culture collection no.

BCRC 17964, CCM 7684, DSM 22517

[Ref.: #91509]

SI-ID 370647

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agaricicola taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from the edible mushroom Agaricus blazei.	Chu JN, Arun AB, Chen WM, Chou JH, Shen FT, Rekha PD, Kampfer P, Young LS, Lin SY, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.016485-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29588

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25980 (see below)

#42638

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22517

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91509

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370647.1 )

#25980

IJSEM 2032 2010 ( DOI 10.1099/ijs.0.016485-0 , PubMed 19819997 )

* These data were automatically processed and therefore are not curated

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Agaricicola taiwanensis strain CCM 7684

Agaricicola taiwanensis strain CCM 7684

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