Haladaptatus litoreus (CGMCC 1.7737, JCM 15771, ROI-28)

Name: Haladaptatus litoreus (CGMCC 1.7737, JCM 15771, ROI-28)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133566

Type strain

Strain Designation ROI-28

Culture col. no. CGMCC 1.7737 JCM 15771 ROI-28

NCBI tax ID(s) 553468

Special Collections JCM Literature strains

History H.-L. Cui RO1-28.

Links

Haladaptatus litoreus ROI-28 is an aerobe, Gram-negative, coccus-shaped prokaryote that was isolated from Marine solar saltern.

Gram-negative coccus-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 132935

JCM 15771

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Halobacteriaceae

Genus Haladaptatus

Species Haladaptatus litoreus

Full scientific name Haladaptatus litoreus Cui et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape	Motility
29563	negative	1.25 µm	coccus-shaped

Pigmentation

29563

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29563	positive	growth	25-55
29563	positive	optimum	38.5	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29563	positive	optimum	7
29563	positive	growth	6-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

29563

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29563	NaCl	positive	growth	9.86-29.58 %
29563	NaCl	positive	optimum	19.72 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29563	30089 ChEBI	acetate	+	carbon source
29563	16449 ChEBI	alanine	+	carbon source
29563	29016 ChEBI	arginine	+	carbon source
29563	35391 ChEBI	aspartate	+	carbon source
29563	28260 ChEBI	galactose	+	carbon source
29563	17234 ChEBI	glucose	+	carbon source
29563	29987 ChEBI	glutamate	+	carbon source
29563	17754 ChEBI	glycerol	+	carbon source
29563	24996 ChEBI	lactate	+	carbon source
29563	17306 ChEBI	maltose	+	carbon source
29563	29864 ChEBI	mannitol	+	carbon source
29563	37684 ChEBI	mannose	+	carbon source
29563	17632 ChEBI	nitrate	+	reduction
29563	18257 ChEBI	ornithine	+	carbon source
29563	15361 ChEBI	pyruvate	+	carbon source
29563	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29563	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29563	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
29563	catalase	+	1.11.1.6
29563	cytochrome oxidase	+	1.9.3.1
29563	gelatinase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ethanol fermentation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	ceramide biosynthesis	100	1 of 1
66794	enterobactin biosynthesis	100	3 of 3
66794	flavin biosynthesis	100	15 of 15
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	aerobactin biosynthesis	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	vitamin K metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	pyrimidine metabolism	73.33	33 of 45
66794	NAD metabolism	72.22	13 of 18
66794	photosynthesis	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	urea cycle	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	histidine metabolism	68.97	20 of 29
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	arginine metabolism	66.67	16 of 24
66794	valine metabolism	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	non-pathway related	65.79	25 of 38
66794	purine metabolism	64.89	61 of 94
66794	glutathione metabolism	64.29	9 of 14
66794	carotenoid biosynthesis	63.64	14 of 22
66794	tryptophan metabolism	63.16	24 of 38
66794	oxidative phosphorylation	62.64	57 of 91
66794	ketogluconate metabolism	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	3-chlorocatechol degradation	60	3 of 5
66794	creatinine degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	lysine metabolism	57.14	24 of 42
66794	propanol degradation	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	metabolism of disaccharids	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	pentose phosphate pathway	54.55	6 of 11
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	arachidonic acid metabolism	50	9 of 18
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	starch degradation	50	5 of 10
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	coenzyme M biosynthesis	50	5 of 10
66794	degradation of sugar alcohols	50	8 of 16
66794	tyrosine metabolism	50	7 of 14
66794	quinate degradation	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of pentoses	46.43	13 of 28
66794	vitamin B12 metabolism	44.12	15 of 34
66794	mevalonate metabolism	42.86	3 of 7
66794	glycogen metabolism	40	2 of 5
66794	peptidoglycan biosynthesis	40	6 of 15
66794	hydrogen production	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	cholesterol biosynthesis	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	sulfate reduction	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	phenol degradation	30	6 of 20
66794	myo-inositol biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	butanoate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	ascorbate metabolism	22.73	5 of 22
66794	lipid A biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29563	Marine solar saltern
67770	Marine solar saltern in Jiangsu	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU887285 (>99% sequence identity) for Haladaptatus litoreus from Microbeatlas

Aquatic Samples	74
Soil Samples	82
Animal Samples	3
Plant Samples	1
Total Samples	160

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2681812914 annotated assembly for Haladaptatus litoreus CGMCC 1.7737	scaffold	GCA_900156425	553468.4	2681812914	553468	74.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29563	Haladaptatus litoreus strain RO1-28 16S ribosomal RNA gene, complete sequence	EU887285	1472		553468
124043	Haladaptatus litoreus gene for 16S rRNA, complete sequence, strain: JCM 15771.	AB663346	1472		553468

GC content

@ref	GC-content (mol%)	Method
29563	54
67770	54	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haladaptatus litoreus CGMCC 1.7737
NCBI: GCA_900156425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.70	no
125439	motility	BacteriaNetⓘ	no	61.30	no
125439	gram_stain	BacteriaNetⓘ	negative	66.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	83.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haladaptatus pallidirubidus sp. nov., a halophilic archaeon isolated from saline soil samples in Yunnan and Xinjiang, China.	Liu BB, Zhao WY, Chu X, Hozzein WN, Prabhu DM, Wadaan MA, Tang SK, Zhang LL, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0259-4	2014
Phylogeny	Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus.	Cui HL, Sun FF, Gao X, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.015933-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25958	IJSEM 1085 2010 ( DOI 10.1099/ijs.0.015933-0 , PubMed 19666806 )
#29563	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25958
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haladaptatus litoreus (CGMCC 1.7737, JCM 15771, ROI-28)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900156425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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