Arenibacter nanhaiticus (LMG 24842, CCTCC AB 208315, MCCC 1A04137)

Name: Arenibacter nanhaiticus (LMG 24842, CCTCC AB 208315, MCCC 1A04137)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133500

Type strain

Strain Designation NH36A

Culture col. no. LMG 24842 CCTCC AB 208315 MCCC 1A04137 NH36A

NCBI tax ID(s) 558155

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Arenibacter nanhaiticus NH36A is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.

Gram-negative motile rod-shaped aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 267158

LMG 24842

@ref 20215

Last LPSN update 2026-05-29 08:38:06

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Arenibacter

Species Arenibacter nanhaiticus

Full scientific name Arenibacter nanhaiticus Sun et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
29205	negative	2.6 µm	0.61 µm	rod-shaped		gliding

Pigmentation

29205

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29205	positive	growth	10-40
29205	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
29205	positive	optimum	7.75
29205	positive	growth	6.1-9.6	alkaliphile

Physiology and metabolism

Oxygen tolerance

29205

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29205	NaCl	positive	growth	0.5-6.5 %
29205	NaCl	positive	optimum	2.25 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29205	30089 ChEBI	acetate	+	carbon source
29205	17057 ChEBI	cellobiose	+	carbon source
29205	23652 ChEBI	dextrin	+	carbon source
29205	28757 ChEBI	fructose	+	carbon source
29205	28260 ChEBI	galactose	+	carbon source
29205	17234 ChEBI	glucose	+	carbon source
29205	29987 ChEBI	glutamate	+	carbon source
29205	18403 ChEBI	L-arabitol	+	carbon source
29205	17716 ChEBI	lactose	+	carbon source
29205	17306 ChEBI	maltose	+	carbon source
29205	37684 ChEBI	mannose	+	carbon source
29205	37657 ChEBI	methyl D-glucoside	+	carbon source
29205	506227 ChEBI	N-acetylglucosamine	+	carbon source
29205	16634 ChEBI	raffinose	+	carbon source
29205	15963 ChEBI	ribitol	+	carbon source
29205	30911 ChEBI	sorbitol	+	carbon source
29205	17992 ChEBI	sucrose	+	carbon source
29205	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29205	acid phosphatase	+	3.1.3.2
29205	alkaline phosphatase	+	3.1.3.1
29205	alpha-galactosidase	+	3.2.1.22
29205	catalase	+	1.11.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	kanosamine biosynthesis II	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	gluconeogenesis	100	8 of 8
66794	starch degradation	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	ribulose monophosphate pathway	100	2 of 2
66794	CMP-KDO biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	vitamin K metabolism	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	heme metabolism	85.71	12 of 14
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	d-mannose degradation	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	butanoate fermentation	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	proline metabolism	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	degradation of sugar acids	72	18 of 25
66794	propanol degradation	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	tryptophan metabolism	71.05	27 of 38
66794	vitamin B1 metabolism	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	pyrimidine metabolism	66.67	30 of 45
66794	formaldehyde oxidation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	degradation of pentoses	64.29	18 of 28
66794	citric acid cycle	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	lipid metabolism	61.29	19 of 31
66794	cysteine metabolism	61.11	11 of 18
66794	propionate fermentation	60	6 of 10
66794	mevalonate metabolism	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	degradation of hexoses	55.56	10 of 18
66794	non-pathway related	55.26	21 of 38
66794	urea cycle	53.85	7 of 13
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	grixazone biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	isoprenoid biosynthesis	50	13 of 26
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycine metabolism	50	5 of 10
66794	arginine metabolism	50	12 of 24
66794	metabolism of disaccharids	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	oxidative phosphorylation	43.96	40 of 91
66794	carotenoid biosynthesis	40.91	9 of 22
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	creatinine degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	phenol degradation	35	7 of 20
66794	nitrate assimilation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	polyamine pathway	26.09	6 of 23
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	alginate biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

29205

Sample typemarine sediment

Taxonmaps

69479

Global distribution of 16S sequence EU999955 (>99% sequence identity) for Arenibacter nanhaiticus subclade from Microbeatlas

Aquatic Samples	2781
Soil Samples	64
Animal Samples	363
Plant Samples	4
Total Samples	3212

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29205	Arenibacter nanhaiticus strain NH36A 16S ribosomal RNA gene, partial sequence	EU999955	1464		558155

GC content

29205

GC-content (mol%)38.9

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	New phenethylamine derivatives from Arenibacter nanhaiticus sp. nov. NH36A(T) and their antimicrobial activity.	Chen Y, Tang J, Tang X, Wang C, Lian Y, Shao Z, Yao X, Gao H	J Antibiot (Tokyo)	10.1038/ja.2013.65	2013
Phylogeny	Arenibacter nanhaiticus sp. nov., isolated from marine sediment of the South China Sea.	Sun F, Wang B, Du Y, Liu X, Lai Q, Li G, Luo J, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.008573-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25626	IJSEM 78 2010 ( DOI 10.1099/ijs.0.008573-0 , PubMed 19648347 )
#29205	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25626
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Arenibacter nanhaiticus (LMG 24842, CCTCC AB 208315, MCCC 1A04137)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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