Name: Planctobacterium marinum K7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133415

Type strain:

Species: Planctobacterium marinum

Strain Designation: K7

Culture col. no.: LMG 28835, KCTC 42657, BCRC 80901

Strain history: <- Wen-Ming Chen, National Kaohsiung Marine Univ.

NCBI tax ID(s): 1631968 (species)

Section

Planctobacterium marinum K7 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from seawater sample collected; from the South China Sea.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Planctobacterium*
	Species	**Planctobacterium marinum**
	Full Scientific Name (LPSN)	Planctobacterium marinum Sheu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25260]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.973

[Ref.: #25260]	Cell length	2.5-4.5 µm

[Ref.: #25260]	Cell width	0.8-1.0 µm

[Ref.: #25260]	Cell shape	rod-shaped

[Ref.: #25260]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.989

[Ref.: #25260]	Colony size	0.8-1.8 mm
[Ref.: #25260]	Colony color	yellow
[Ref.: #25260]	Colony shape	circular
[Ref.: #25260]	Incubation period	2 days
[Ref.: #25260]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25260]

Culture medium

Marine agar (MA)

[Ref.: #25260]

Culture medium growth

		Temperature
[Ref.: #25260]	growth	4-35 °C
[Ref.: #25260]	optimum	25-30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #25260]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25260]			optimum	7
[Ref.: #25260]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25260]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #25260]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.914

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25260]		NaCl		growth	0.5-10	%(w/v)
[Ref.: #25260]		NaCl		optimum	4	%(w/v)

[Ref.: #25260]

Observation

Poly-b-hydroxybutyrate accumulation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25260]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #25260]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #25260]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #25260]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #25260]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #25260]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #25260]	acetate ChEBI	+	carbon source
[Ref.: #25260]	adipate ChEBI	-	assimilation
[Ref.: #25260]	alginate ChEBI	-	hydrolysis
[Ref.: #25260]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #25260]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25260]	alpha-lactose ChEBI	+	carbon source
[Ref.: #25260]	arabinose ChEBI	-	assimilation
[Ref.: #25260]	beta-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #25260]	butyrate ChEBI	-	assimilation
[Ref.: #25260]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25260]	casein	+	hydrolysis
[Ref.: #25260]	chitin ChEBI	-	hydrolysis
[Ref.: #25260]	citrate ChEBI	-	assimilation
[Ref.: #25260]	citrate ChEBI	+	carbon source
[Ref.: #25260]	corn oil	-	hydrolysis
[Ref.: #25260]	D-alanine ChEBI	+	carbon source
[Ref.: #25260]	D-fructose ChEBI	+	carbon source
[Ref.: #25260]	D-galactose ChEBI	+	carbon source
[Ref.: #25260]	D-glucarate ChEBI	+	carbon source
[Ref.: #25260]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #25260]	D-glucuronate ChEBI	+	carbon source
[Ref.: #25260]	D-psicose ChEBI	+	carbon source
[Ref.: #25260]	D-serine ChEBI	+	carbon source
[Ref.: #25260]	dna ChEBI	+	hydrolysis
[Ref.: #25260]	erythritol ChEBI	+	carbon source
[Ref.: #25260]	esculin ChEBI	+	hydrolysis
[Ref.: #25260]	ethanolamine ChEBI	+	carbon source
[Ref.: #25260]	gelatin ChEBI	+	hydrolysis
[Ref.: #25260]	gentiobiose ChEBI	+	carbon source
[Ref.: #25260]	gluconate ChEBI	-	assimilation
[Ref.: #25260]	glucose ChEBI	-	fermentation
[Ref.: #25260]	glucose ChEBI	-	assimilation
[Ref.: #25260]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #25260]	glycerol ChEBI	+	carbon source
[Ref.: #25260]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #25260]	glycogen ChEBI	+	carbon source
[Ref.: #25260]	glycyl L-aspartic acid ChEBI	+	carbon source
[Ref.: #25260]	inosine ChEBI	+	carbon source
[Ref.: #25260]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #25260]	L-asparagine ChEBI	+	carbon source
[Ref.: #25260]	L-aspartate ChEBI	+	carbon source
[Ref.: #25260]	L-glutamate ChEBI	+	carbon source
[Ref.: #25260]	L-ornithine ChEBI	+	carbon source
[Ref.: #25260]	L-phenylalanine ChEBI	+	carbon source
[Ref.: #25260]	L-proline ChEBI	+	carbon source
[Ref.: #25260]	L-pyroglutamic acid ChEBI	+	carbon source
[Ref.: #25260]	L-serine ChEBI	+	carbon source
[Ref.: #25260]	L-threonine ChEBI	+	carbon source
[Ref.: #25260]	lactate ChEBI	+	carbon source
[Ref.: #25260]	lactulose ChEBI	+	carbon source
[Ref.: #25260]	malate ChEBI	-	assimilation
[Ref.: #25260]	malonate ChEBI	+	carbon source
[Ref.: #25260]	maltose ChEBI	-	assimilation
[Ref.: #25260]	mannitol ChEBI	-	assimilation
[Ref.: #25260]	mannose ChEBI	-	assimilation
[Ref.: #25260]	myo-inositol ChEBI	+	carbon source
[Ref.: #25260]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #25260]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25260]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25260]	nitrate ChEBI	-	reduction
[Ref.: #25260]	phenylacetate ChEBI	-	assimilation
[Ref.: #25260]	phenylethylamine ChEBI	+	carbon source
[Ref.: #25260]	propionate ChEBI	+	carbon source
[Ref.: #25260]	putrescine ChEBI	+	carbon source
[Ref.: #25260]	ribitol ChEBI	+	carbon source
[Ref.: #25260]	starch ChEBI	+	hydrolysis
[Ref.: #25260]	succinate ChEBI	+	carbon source
[Ref.: #25260]	thymidine ChEBI	+	carbon source
[Ref.: #25260]	trehalose ChEBI	+	carbon source
[Ref.: #25260]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25260]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25260]	tween 40 ChEBI	+	carbon source
[Ref.: #25260]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25260]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25260]	tween 80 ChEBI	+	carbon source
[Ref.: #25260]	uridine ChEBI	+	carbon source
[Ref.: #25260]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25260]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25260]	acid phosphatase	+	3.1.3.2
[Ref.: #25260]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25260]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25260]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25260]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25260]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25260]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25260]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25260]	beta-galactosidase	-	3.2.1.23
[Ref.: #25260]	beta-glucosidase	-	3.2.1.21
[Ref.: #25260]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25260]	catalase	+	1.11.1.6
[Ref.: #25260]	cystine arylamidase	+	3.4.11.3
[Ref.: #25260]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25260]	esterase (C 4)	+
[Ref.: #25260]	esterase Lipase (C 8)	+
[Ref.: #25260]	leucine arylamidase	+	3.4.11.1
[Ref.: #25260]	lipase (C 14)	+
[Ref.: #25260]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25260]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25260]	trypsin	+	3.4.21.4
[Ref.: #25260]	urease	-	3.5.1.5
[Ref.: #25260]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25260]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	26.9
C16:0	24.1
C18:1ω7c	15.1
C16:0 iso	5.1
C17:1ω8c	4.5
C12:0 3OH	3.9
C15:1ω8c	2.8
C14:0	2.4
C17:0	2.2
C18:0	2.2
C17:1 anteiso ω9c	1.8
C12:0	1.7
N alcohol C16:0	1.4
C17:0 iso	1.3
C18:0 iso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25260]	Sample type/isolated from	seawater sample collected from the South China Sea
[Ref.: #25260]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #25260]	Country	Taiwan
[Ref.: #25260]	Country ISO 3 Code	TWN
[Ref.: #25260]	Continent	Asia
[Ref.: #25260]	Geographic location	21.0000°/119.0000°

[Ref.: #67771]	Sample type/isolated from	From the South China Sea and characterized using a polyphasic taxonomy approach
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN830270 (>99% sequence identity) for Planctobacterium marinum subclade from Microbeatlas

Aquatic Samples	166
Soil Samples	1
Animal Samples	8
Plant Samples	1
Total Samples	176

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25260]	16S rRNA gene sequences	LN830270	1497	ENA	1631968 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planctobacterium marinum K7	GCA_020687805	scaffold	GenBank	1631968 tax ID	*

[Ref.: #25260]

GC-content

46.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planctobacterium marinum K7 NCBI: GCA_020687805.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planctobacterium marinum K7 NCBI: GCA_020687805.1
[Ref.: #69480]	flagellated	yes	86.897	no
[Ref.: #69480]	gram-positive	no	98.981	yes
[Ref.: #69480]	anaerobic	no	98.101	yes
[Ref.: #69480]	aerobic	yes	91.133	no
[Ref.: #69480]	halophile	no	62.005	no
[Ref.: #69480]	spore-forming	no	95.856	no
[Ref.: #69480]	motile	yes	91.209	yes
[Ref.: #69480]	thermophile	no	99.405	yes
[Ref.: #69480]	glucose-util	yes	88.242	no
[Ref.: #69480]	glucose-ferment	no	84.246	yes

Availability in culture collections External links

[Ref.: #25260]

Culture collection no.

LMG 28835, KCTC 42657, BCRC 80901

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planctobacterium marinum gen. nov., sp. nov., a new member of the family Alteromonadaceae isolated from seawater.	Sheu DS, Sheu SY, Lin KR, Chen YL, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001726	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25260

D. S. S. Sheu, S. Y.,Lin, K. R.,Chen, Y. L.,Chen, W. M.: Planctobacterium marinum gen. nov., sp. nov., a new member of the family Alteromonadaceae isolated from seawater. IJSEM 67: 974 - 980 2017 ( DOI 10.1099/ijsem.0.001726 , PubMed 27959781 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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