Name: Corticicoccus populi 26D10-3-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133399

Type strain:

Species: Corticicoccus populi

Strain Designation: 26D10-3-4

Culture col. no.: CFCC 12725, KCTC 33575

Strain history: <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

NCBI tax ID(s): 1812821 (species)

Section

Corticicoccus populi 26D10-3-4 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from symptomatic bark tissue of a Populus euramericana canker.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Corticicoccus*
	Species	**Corticicoccus populi**
	Full Scientific Name (LPSN)	Corticicoccus populi Li et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25283]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #25283]	Cell width	1.2-1.5 µm

[Ref.: #25283]	Cell shape	coccus-shaped

[Ref.: #25283]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #25283]	Colony size	1.0-2.0 mm
[Ref.: #25283]	Colony color	milk-white
[Ref.: #25283]	Colony shape	circular
[Ref.: #25283]	Incubation period	2 days
[Ref.: #25283]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25283]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #25283]

Culture medium growth

		Temperature
[Ref.: #25283]	growth	10-37 °C
[Ref.: #25283]	optimum	28-30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #25283]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #25283]		optimum	7.0-8.0
[Ref.: #25283]		growth	6
[Ref.: #25283]		growth	10
[Ref.: #25283]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25283]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #25283]	NaCl		optimum	2	%
[Ref.: #25283]	NaCl	no	growth	10	%
[Ref.: #25283]	NaCl	no	growth	20	%
[Ref.: #25283]	NaCl		growth	0-4	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7(91.5%), MK-6(8.5%)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25283]	2,3-butanediol ChEBI	+	respiration
[Ref.: #25283]	2-deoxyadenosine ChEBI	+	respiration
[Ref.: #25283]	2-hydroxybutyrate ChEBI	+	respiration
[Ref.: #25283]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #25283]	adenosine ChEBI	+	respiration
[Ref.: #25283]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #25283]	arabinose ChEBI	-	builds acid from
[Ref.: #25283]	citrate ChEBI	-	assimilation
[Ref.: #25283]	D-fructose ChEBI	+	respiration
[Ref.: #25283]	D-fructose ChEBI	+	builds acid from
[Ref.: #25283]	D-galactose ChEBI	+	respiration
[Ref.: #25283]	D-glucose ChEBI	+	builds acid from
[Ref.: #25283]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25283]	D-mannitol ChEBI	+	respiration
[Ref.: #25283]	D-mannose ChEBI	+	respiration
[Ref.: #25283]	D-psicose ChEBI	+	respiration
[Ref.: #25283]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #25283]	dextrin ChEBI	+	respiration
[Ref.: #25283]	esculin ChEBI	+	builds acid from
[Ref.: #25283]	esculin ChEBI	+	hydrolysis
[Ref.: #25283]	gelatin ChEBI	-	hydrolysis
[Ref.: #25283]	glycerol ChEBI	-	builds acid from
[Ref.: #25283]	glycerol ChEBI	+	respiration
[Ref.: #25283]	glycyl-l-glutamate ChEBI	+	respiration
[Ref.: #25283]	L-glutamate ChEBI	+	respiration
[Ref.: #25283]	L-malate ChEBI	+	respiration
[Ref.: #25283]	maltotriose ChEBI	+	respiration
[Ref.: #25283]	melezitose ChEBI	+/-	builds acid from
[Ref.: #25283]	methyl (R)-lactate ChEBI	+	respiration
[Ref.: #25283]	methyl beta-D-galactoside ChEBI	+	respiration
[Ref.: #25283]	methyl D-glucoside ChEBI	+	respiration
[Ref.: #25283]	methyl pyruvate ChEBI	+	respiration
[Ref.: #25283]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #25283]	nitrate ChEBI	-	reduction
[Ref.: #25283]	salicin ChEBI	-	builds acid from
[Ref.: #25283]	salicin ChEBI	+	respiration
[Ref.: #25283]	succinate ChEBI	+	respiration
[Ref.: #25283]	sucrose ChEBI	-	builds acid from
[Ref.: #25283]	thymidine ChEBI	+	respiration
[Ref.: #25283]	trehalose ChEBI	-	builds acid from
[Ref.: #25283]	trehalose ChEBI	+	respiration
[Ref.: #25283]	turanose ChEBI	+	respiration
[Ref.: #25283]	turanose ChEBI	+/-	builds acid from
[Ref.: #25283]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25283]	acetoin ChEBI	no
[Ref.: #25283]	hydrogen sulfide ChEBI	no
[Ref.: #25283]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #25283]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25283]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25283]	beta-galactosidase	-	3.2.1.23
[Ref.: #25283]	beta-glucosidase	+	3.2.1.21
[Ref.: #25283]	catalase	+	1.11.1.6
[Ref.: #25283]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25283]	esterase (C 4)	+/-
[Ref.: #25283]	esterase Lipase (C 8)	+
[Ref.: #25283]	gelatinase	-
[Ref.: #25283]	leucine arylamidase	+	3.4.11.1
[Ref.: #25283]	lysine decarboxylase	-	4.1.1.18
[Ref.: #25283]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #25283]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25283]	urease	-	3.5.1.5
[Ref.: #25283]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25283]

Fatty acid	Percentage
C15:0 anteiso	32.2
C15:0 iso	28.2
C17:0 iso	11.7
C17:0 anteiso	10.2
C17:1 iso ω10c	5.7
C16:0	4.4
C16:0 iso	2.1
C19:0 iso	1.8
C14:0	1.2
C14:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25283]	Sample type/isolated from	symptomatic bark tissue of a Populus euramericana canker
[Ref.: #25283]	Geographic location (country and/or sea, region)	Anyang City, Henan Province, China
[Ref.: #25283]	Country	China
[Ref.: #25283]	Country ISO 3 Code	CHN
[Ref.: #25283]	Continent	Asia
[Ref.: #25283]	Isolation date	2014-08

[Ref.: #67771]	Sample type/isolated from	From symptomatic bark tissue of a `Populus Ã— euramericana` canker(Poplar bark)
[Ref.: #67771]	Geographic location (country and/or sea, region)	Puyang City
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT988031 (>99% sequence identity) for Corticicoccus populi subclade from Microbeatlas

Aquatic Samples	164
Soil Samples	148
Animal Samples	2262
Plant Samples	147
Total Samples	2721

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25283]	16S rRNA gene sequences	KT988031	1465	ENA	1812821 tax ID
[Ref.: #25283]	16S rRNA gene sequences	KT988030	1467	ENA	1812821 tax ID

[Ref.: #25283]	GC-content	38.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	38.2 mol%

Availability in culture collections External links

[Ref.: #25283]

Culture collection no.

CFCC 12725, KCTC 33575

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus x euramericana canker.	Li Y, Wang SK, Xue H, Chang JP, Guo LM, Yang XQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001602	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25283

Y. W. Li, S. K.,Xue, H.,Chang, J. P.,Guo, L. M.,Yang, X. Q.: Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus x euramericana canker. IJSEM 67: 789 - 794 2017 ( DOI 10.1099/ijsem.0.001602 , PubMed 27902236 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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