Corticicoccus populi (CFCC 12725, KCTC 33575, 26D10-3-4)

Name: Corticicoccus populi (CFCC 12725, KCTC 33575, 26D10-3-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133399

Type strain

Strain Designation 26D10-3-4

Culture col. no. CFCC 12725 KCTC 33575 26D10-3-4

NCBI tax ID(s) 1812821

Special Collections KCTC Literature strains

History KCTC <- Yong Li, Dongxiaoful, Haidian district, Beijing, China

Links

Corticicoccus populi 26D10-3-4 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from symptomatic bark tissue of a Populus euramericana canker.

Gram-positive coccus-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286512

KCTC 33575

@ref 20215

Last LPSN update 2026-05-29 08:38:05

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Corticicoccus

Species Corticicoccus populi

Full scientific name Corticicoccus populi Li et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell width	Cell shape
25283	positive	1.2-1.5 µm	coccus-shaped
67771
67771	positive

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25283	1.0-2.0 mm	milk-white	circular	2 days	TSA

Culture and growth conditions

Culture medium

@ref	Name	Growth
25283	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
25283	positive	growth	10-37
25283	positive	optimum	28-30
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
25283	positive	optimum	7.0-8.0
25283	positive	growth	6
25283	positive	growth	10	alkaliphile
25283		growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25283	aerobe
67771	aerobe
125439	obligate aerobe	91.934

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25283	NaCl		optimum	2 %
25283	NaCl		growth	10 %
25283	NaCl		growth	20 %
25283	NaCl	positive	growth	0-4 %(w/v)

Observation

67771

Observationquinones: MK-7(91.5%), MK-6(8.5%)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25283	62064 ChEBI	2,3-butanediol	+	respiration
25283	17256 ChEBI	2-deoxyadenosine	+	respiration
25283	64552 ChEBI	2-hydroxybutyrate	+	respiration
25283	30916 ChEBI	2-oxoglutarate	+	respiration
25283	16335 ChEBI	adenosine	+	respiration
25283	17925 ChEBI	alpha-D-glucose	+	respiration
25283	22599 ChEBI	arabinose	-	builds acid from
25283	16947 ChEBI	citrate	-	assimilation
25283	15824 ChEBI	D-fructose	+	respiration
25283	15824 ChEBI	D-fructose	+	builds acid from
25283	12936 ChEBI	D-galactose	+	respiration
25283	17634 ChEBI	D-glucose	+	builds acid from
25283	16899 ChEBI	D-mannitol	-	builds acid from
25283	16899 ChEBI	D-mannitol	+	respiration
25283	16024 ChEBI	D-mannose	+	respiration
25283	27605 ChEBI	D-psicose	+	respiration
25283	65327 ChEBI	D-xylose	+/-	builds acid from
25283	23652 ChEBI	dextrin	+	respiration
25283	4853 ChEBI	esculin	+	builds acid from
25283	4853 ChEBI	esculin	+	hydrolysis
25283	5291 ChEBI	gelatin	-	hydrolysis
25283	17754 ChEBI	glycerol	-	builds acid from
25283	17754 ChEBI	glycerol	+	respiration
25283	73784 ChEBI	glycyl-l-glutamate	+	respiration
25283	29985 ChEBI	L-glutamate	+	respiration
25283	15589 ChEBI	L-malate	+	respiration
25283	61993 ChEBI	maltotriose	+	respiration
25283	6731 ChEBI	melezitose	+/-	builds acid from
25283	74611 ChEBI	methyl (R)-lactate	+	respiration
25283	17540 ChEBI	methyl beta-D-galactoside	+	respiration
25283	37657 ChEBI	methyl D-glucoside	+	respiration
25283	51850 ChEBI	methyl pyruvate	+	respiration
25283	506227 ChEBI	N-acetylglucosamine	+	respiration
25283	17632 ChEBI	nitrate	-	reduction
25283	17814 ChEBI	salicin	-	builds acid from
25283	17814 ChEBI	salicin	+	respiration
25283	30031 ChEBI	succinate	+	respiration
25283	17992 ChEBI	sucrose	-	builds acid from
25283	17748 ChEBI	thymidine	+	respiration
25283	27082 ChEBI	trehalose	-	builds acid from
25283	27082 ChEBI	trehalose	+	respiration
25283	32528 ChEBI	turanose	+	respiration
25283	32528 ChEBI	turanose	+/-	builds acid from
25283	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
25283	15688 ChEBI	acetoin
25283	16136 ChEBI	hydrogen sulfide
25283	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
25283	alkaline phosphatase	+	3.1.3.1
25283	arginine dihydrolase	-	3.5.3.6
25283	beta-galactosidase	-	3.2.1.23
25283	beta-glucosidase	+	3.2.1.21
25283	catalase	+	1.11.1.6
25283	cytochrome oxidase	+	1.9.3.1
25283	esterase (C 4)	+/-
25283	esterase Lipase (C 8)	+
25283	gelatinase	-
25283	leucine arylamidase	+	3.4.11.1
25283	lysine decarboxylase	-	4.1.1.18
25283	ornithine decarboxylase	-	4.1.1.17
25283	tryptophan deaminase	-	4.1.99.1
25283	urease	-	3.5.1.5
25283	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

25283

Fatty acid	Percentage
C15:0 anteiso	32.2
C15:0 iso	28.2
C17:0 iso	11.7
C17:0 anteiso	10.2
C17:1 iso ω10c	5.7
C16:0	4.4
C16:0 iso	2.1
C19:0 iso	1.8
C14:0	1.2
C14:0 iso	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
25283	symptomatic bark tissue of a Populus euramericana canker	Anyang City, Henan Province, China	China	CHN	Asia	2014-08
67771	From symptomatic bark tissue of a `Populus Ã— euramericana` canker(Poplar bark)	Puyang City	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KT988031 (>99% sequence identity) for Corticicoccus populi subclade from Microbeatlas

Aquatic Samples	164
Soil Samples	148
Animal Samples	2262
Plant Samples	147
Total Samples	2721

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4268619v1 assembly for Corticicoccus populi KCTC 33575	contig	GCA_042686195	1812821	73.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25283	Corticicoccus populi strain 26D10-3-4 16S ribosomal RNA gene, partial sequence	KT988031	1465		1812821
25283	Corticicoccus populi strain 9-4-1 16S ribosomal RNA gene, partial sequence	KT988030	1467		1812821

GC content

@ref	GC-content (mol%)	Method
25283	38.2	high performance liquid chromatography (HPLC)
67771	38.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4268619v1 assembly for Corticicoccus populi KCTC 33575
NCBI: GCA_042686195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.93	no
125439	motility	BacteriaNetⓘ	yes	83.06	no
125439	gram_stain	BacteriaNetⓘ	variable	62.91	no
125439	spore_formation	BacteriaNetⓘ	yes	86.63	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus x euramericana canker.	Li Y, Wang SK, Xue H, Chang JP, Guo LM, Yang XQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001602	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25283	Y. W. Li, S. K.,Xue, H.,Chang, J. P.,Guo, L. M.,Yang, X. Q.: Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus x euramericana canker. IJSEM 67: 789 - 794 2017 ( DOI 10.1099/ijsem.0.001602 , PubMed 27902236 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corticicoccus populi (CFCC 12725, KCTC 33575, 26D10-3-4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042686195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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