Name: Marinobacter halotolerans CP12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133354

Type strain:

Species: Marinobacter halotolerans

Strain Designation: CP12

Culture col. no.: KACC 18381, NBRC 110910

NCBI tax ID(s): 1569211 (species)

Section

Marinobacter halotolerans CP12 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from crystallizing pond of a saltern.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacter*
	Species	**Marinobacter halotolerans**
	Full Scientific Name (LPSN)	Marinobacter halotolerans Kim et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25192]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #25192]	Cell shape	rod-shaped

[Ref.: #25192]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %91.263

[Ref.: #25192]	Colony color	whitish-yellow
[Ref.: #25192]	Colony shape	circular
[Ref.: #25192]	Incubation period	3 days
[Ref.: #25192]	Cultivation medium used	marine agar (MA)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25192]

Culture medium

marine agar (MA)

[Ref.: #25192]

Culture medium growth

[Ref.: #25192]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #25192]			growth	10.0-37.0 °C
[Ref.: #25192]			optimum	37 °C

[Ref.: #25192]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25192]			optimum	7
[Ref.: #25192]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25192]

Oxygen tolerance

aerobe

[Ref.: #25192]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Salt	Tested relation		Salt conc.
[Ref.: #25192]	NaCl	no	growth	25	%
[Ref.: #25192]	NaCl		optimum	3	%
[Ref.: #25192]	NaCl		growth	0.5-20.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25192]	arabinose ChEBI	+	assimilation
[Ref.: #25192]	arginine ChEBI	+	hydrolysis
[Ref.: #25192]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25192]	casein	-	hydrolysis
[Ref.: #25192]	cellobiose ChEBI	+	builds acid from
[Ref.: #25192]	citrate ChEBI	+	assimilation
[Ref.: #25192]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25192]	D-fructose ChEBI	-	builds acid from
[Ref.: #25192]	D-galactose ChEBI	+	builds acid from
[Ref.: #25192]	D-glucose ChEBI	+	builds acid from
[Ref.: #25192]	D-glucose ChEBI	+	assimilation
[Ref.: #25192]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25192]	D-mannose ChEBI	-	builds acid from
[Ref.: #25192]	D-ribose ChEBI	-	builds acid from
[Ref.: #25192]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25192]	D-xylose ChEBI	-	builds acid from
[Ref.: #25192]	erythritol ChEBI	-	builds acid from
[Ref.: #25192]	esculin ChEBI	+	builds acid from
[Ref.: #25192]	esculin ChEBI	+	hydrolysis
[Ref.: #25192]	gelatin ChEBI	+	hydrolysis
[Ref.: #25192]	gluconate ChEBI	+	assimilation
[Ref.: #25192]	glycerol ChEBI	-	builds acid from
[Ref.: #25192]	lactose ChEBI	-	builds acid from
[Ref.: #25192]	malate ChEBI	+	assimilation
[Ref.: #25192]	maltose ChEBI	+	builds acid from
[Ref.: #25192]	maltose ChEBI	+	assimilation
[Ref.: #25192]	mannitol ChEBI	+	assimilation
[Ref.: #25192]	mannose ChEBI	+	assimilation
[Ref.: #25192]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25192]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #25192]	nitrate ChEBI	-	reduction
[Ref.: #25192]	raffinose ChEBI	-	builds acid from
[Ref.: #25192]	sodium citrate ChEBI	+	assimilation
[Ref.: #25192]	starch ChEBI	-	hydrolysis
[Ref.: #25192]	sucrose ChEBI	-	builds acid from
[Ref.: #25192]	tryptophan ChEBI	-	energy source
[Ref.: #25192]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25192]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25192]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25192]	acid phosphatase	+	3.1.3.2
[Ref.: #25192]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25192]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25192]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25192]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25192]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25192]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25192]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25192]	beta-glucosidase	+	3.2.1.21
[Ref.: #25192]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25192]	catalase	+	1.11.1.6
[Ref.: #25192]	cystine arylamidase	-	3.4.11.3
[Ref.: #25192]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25192]	esterase (C 4)	-
[Ref.: #25192]	esterase Lipase (C 8)	-
[Ref.: #25192]	gelatinase	+
[Ref.: #25192]	leucine arylamidase	-	3.4.11.1
[Ref.: #25192]	lipase (C 14)	+
[Ref.: #25192]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25192]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25192]	trypsin	-	3.4.21.4
[Ref.: #25192]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25192]	urease	+	3.5.1.5
[Ref.: #25192]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25192]

Fatty acid	Percentage
C16:0	18.4
Hydroxy C12:0 3-OH	13.9
C16:1ω7c / C15:0 iso 2OH	13.3
C12:0	12.3
10-Methyl C16:0	11.9
C18:1ω9c	10.3
C16:1ω9c	5
C18:0	3.4
C18:1ω7c	2.1
C17:1ω8c	1.9
C17:0	1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25192]	Sample type/isolated from	crystallizing pond of a saltern
[Ref.: #25192]	Geographic location (country and/or sea, region)	Taepyung at Jeungdo on the Yellow Sea
[Ref.: #25192]	Country	Republic of Korea
[Ref.: #25192]	Country ISO 3 Code	KOR
[Ref.: #25192]	Continent	Asia
[Ref.: #25192]	Geographic location	35.0000°/126.0000°
[Ref.: #25192]	Enrichment culture	marine agar (MA; Difco)
[Ref.: #25192]	Enrichment culture composition	with the addition of 8 % (w/v) NaCl [concentration, 10 % (w/v) NaCl]
[Ref.: #25192]	Enrichment culture duration	7 days
[Ref.: #25192]	Enrichment culture temperature	28 ̊C
[Ref.: #25192]	Isolation/enrichment procedure	dilution plating method
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	-
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25192]	Marinobacter salinaria gene for 16S ribosomal RNA, partial sequence, strain: CP12	LC009417	1403	GenBank	1569211 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacter halotolerans NBRC 110910	GCA_008795985	contig	GenBank	1569211 tax ID	*
[Ref.: #66792]	Marinobacter halotolerans strain NBRC 110910 strain not collected	1569211.4	wgs	PATRIC	1569211 tax ID	*
[Ref.: #66792]	Marinobacter halotolerans NBRC 110910	2899480561	draft	JGI IMG/M	1569211 tax ID	*

[Ref.: #25192]

GC-content

55.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marinobacter halotolerans strain NBRC 110910 strain not collected PATRIC: 1569211.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marinobacter halotolerans strain NBRC 110910 strain not collected PATRIC: 1569211.4
[Ref.: #69480]	motile	yes	79.28	yes
[Ref.: #69480]	gram-positive	no	98.344	no
[Ref.: #69480]	anaerobic	no	98.084	yes
[Ref.: #69480]	aerobic	yes	89.814	yes
[Ref.: #69480]	halophile	yes	93.35	no
[Ref.: #69480]	spore-forming	no	96.134	yes
[Ref.: #69480]	thermophile	no	98.182	yes
[Ref.: #69480]	glucose-util	yes	54.032	yes
[Ref.: #69480]	flagellated	yes	81.424	no
[Ref.: #69480]	glucose-ferment	no	88.269	no

Availability in culture collections External links

[Ref.: #25192]

Culture collection no.

KACC 18381, NBRC 110910

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacter halotolerans sp. nov., a halophilic bacterium isolated from a saltern crystallizing pond.	Kim JO, Lee HJ, Han SI, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001653	2017	*
Phylogeny	Marinobacter orientalis sp. nov., a thiosulfate-oxidizing bacterium isolated from a marine solar saltern.	Lian FB, Chen XY, Jiang S, Li GY, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01556-0	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25192

J. O. L. Kim, H. J.,Han, S. I.,Whang, K. S.: Marinobacter halotolerans sp. nov., a halophilic bacterium isolated from a saltern crystallizing pond. IJSEM 67: 460 - 465 2017 ( DOI 10.1099/ijsem.0.001653 , PubMed 27902258 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marinobacter halotolerans strain NBRC 110910 strain not collected

Marinobacter halotolerans strain NBRC 110910 strain not collected

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