Name: Spirosoma soli MIMBbqt12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133260

Type strain:

Species: Spirosoma soli

Strain Designation: MIMBbqt12

Culture col. no.: MCCC 1K01308, KCTC 42805

NCBI tax ID(s): 1770529 (species)

Section

Spirosoma soli MIMBbqt12 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from biological soil crusts.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma soli**
	Full Scientific Name (LPSN)	Spirosoma soli Yang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25056]	Gram stain	negative

[Ref.: #25056]	Cell length	4.8-8.0 µm

[Ref.: #25056]	Cell width	1.4-2.4 µm

[Ref.: #25056]	Cell shape	rod-shaped

[Ref.: #25056]	Motility	no

[Ref.: #25056]	Colony color	light yellow
[Ref.: #25056]	Colony shape	circular
[Ref.: #25056]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25056]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #25056]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25056]			growth	2-35 °C
[Ref.: #25056]			optimum	28 °C

[Ref.: #25056]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25056]			optimum	8
[Ref.: #25056]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25056]

Oxygen tolerance

aerobe

[Ref.: #25056]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25056]		NaCl		growth	0-1.0	%
[Ref.: #25056]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25056]	(S)-lactate ChEBI	+	growth
[Ref.: #25056]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25056]	2-hydroxybutyrate ChEBI	+	growth
[Ref.: #25056]	2-oxobutanoate ChEBI	+	growth
[Ref.: #25056]	3-hydroxybutyrate ChEBI	-	growth
[Ref.: #25056]	4-hydroxyphenylacetic acid ChEBI	+	growth
[Ref.: #25056]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25056]	acetate ChEBI	+	growth
[Ref.: #25056]	alpha-D-glucose ChEBI	+	growth
[Ref.: #25056]	alpha-lactose ChEBI	+	growth
[Ref.: #25056]	cellobiose ChEBI	+	growth
[Ref.: #25056]	cellobiose ChEBI	+	carbon source
[Ref.: #25056]	citrate ChEBI	+	growth
[Ref.: #25056]	D-arabitol ChEBI	-	growth
[Ref.: #25056]	D-fructose ChEBI	+	growth
[Ref.: #25056]	D-fructose ChEBI	+	carbon source
[Ref.: #25056]	D-fucose ChEBI	-	growth
[Ref.: #25056]	D-fucose ChEBI	-	builds acid from
[Ref.: #25056]	D-galactose ChEBI	+	growth
[Ref.: #25056]	D-gluconate ChEBI	-	growth
[Ref.: #25056]	D-glucose ChEBI	+	carbon source
[Ref.: #25056]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25056]	D-malate ChEBI	-	growth
[Ref.: #25056]	D-mannitol ChEBI	+	carbon source
[Ref.: #25056]	D-mannose ChEBI	+	growth
[Ref.: #25056]	D-mannose ChEBI	+	carbon source
[Ref.: #25056]	D-serine ChEBI	-	growth
[Ref.: #25056]	D-sorbitol ChEBI	-	growth
[Ref.: #25056]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25056]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25056]	dextrin ChEBI	+	growth
[Ref.: #25056]	erythritol ChEBI	-	builds acid from
[Ref.: #25056]	esculin ChEBI	+	hydrolysis
[Ref.: #25056]	galactitol ChEBI	-	builds acid from
[Ref.: #25056]	gamma-aminobutyric acid ChEBI	-	growth
[Ref.: #25056]	gluconate ChEBI	-	builds acid from
[Ref.: #25056]	gluconate ChEBI	+	carbon source
[Ref.: #25056]	glucose ChEBI	+	fermentation
[Ref.: #25056]	glycerol ChEBI	+	growth
[Ref.: #25056]	glycogen ChEBI	-	builds acid from
[Ref.: #25056]	glycyl-L-proline ChEBI	-	growth
[Ref.: #25056]	inosine ChEBI	+	growth
[Ref.: #25056]	L-alanine ChEBI	+	growth
[Ref.: #25056]	L-arginine ChEBI	-	growth
[Ref.: #25056]	L-aspartate ChEBI	+	growth
[Ref.: #25056]	L-fucose ChEBI	-	growth
[Ref.: #25056]	L-glutamate ChEBI	+	growth
[Ref.: #25056]	L-histidine ChEBI	+	growth
[Ref.: #25056]	L-malate ChEBI	+	growth
[Ref.: #25056]	L-pyroglutamic acid ChEBI	+	growth
[Ref.: #25056]	L-serine ChEBI	+	growth
[Ref.: #25056]	L-xylose ChEBI	-	builds acid from
[Ref.: #25056]	maltose ChEBI	-	carbon source
[Ref.: #25056]	mannitol ChEBI	-	builds acid from
[Ref.: #25056]	mannose ChEBI	-	assimilation
[Ref.: #25056]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25056]	methyl beta-D-glucopyranoside ChEBI	-	growth
[Ref.: #25056]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25056]	methyl pyruvate ChEBI	-	growth
[Ref.: #25056]	N-acetyl-beta-D-mannosamine ChEBI	-	growth
[Ref.: #25056]	N-acetylgalactosamine ChEBI	+	growth
[Ref.: #25056]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #25056]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #25056]	nitrate ChEBI	+	reduction
[Ref.: #25056]	pectin ChEBI	+	growth
[Ref.: #25056]	ribitol ChEBI	-	builds acid from
[Ref.: #25056]	salicin ChEBI	+	growth
[Ref.: #25056]	starch ChEBI	-	builds acid from
[Ref.: #25056]	sucrose ChEBI	-	growth
[Ref.: #25056]	sucrose ChEBI	-	carbon source
[Ref.: #25056]	turanose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25056]	ampicillin ChEBI		yes
[Ref.: #25056]	polymyxin b ChEBI	yes
[Ref.: #25056]	streptomycin ChEBI		yes
[Ref.: #25056]	tetracycline ChEBI		yes
[Ref.: #25056]	vancomycin ChEBI		yes

	Physiological tests	Metabolite	Methylred-test
[Ref.: #25056]		glucose ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #25056]	acid phosphatase	+	3.1.3.2
[Ref.: #25056]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25056]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25056]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25056]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25056]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #25056]	beta-galactosidase	+	3.2.1.23
[Ref.: #25056]	beta-glucosidase	-	3.2.1.21
[Ref.: #25056]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25056]	catalase	+	1.11.1.6
[Ref.: #25056]	chymotrypsin	+	3.4.4.5
[Ref.: #25056]	cystine arylamidase	-	3.4.11.3
[Ref.: #25056]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25056]	esterase (C 4)	-
[Ref.: #25056]	esterase lipase (C 8)	+
[Ref.: #25056]	leucine arylamidase	+	3.4.11.1
[Ref.: #25056]	lipase (C 14)	-
[Ref.: #25056]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #25056]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25056]	trypsin	+	3.4.21.4
[Ref.: #25056]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25056]	Sample type/isolated from	biological soil crusts
[Ref.: #25056]	Geographic location (country and/or sea, region)	desert of Kubuqi, Inner Mongolia
[Ref.: #25056]	Country	China
[Ref.: #25056]	Country ISO 3 Code	CHN
[Ref.: #25056]	Continent	Asia
[Ref.: #25056]	Enrichment culture	solid R2A
[Ref.: #25056]	Enrichment culture duration	4 days
[Ref.: #25056]	Enrichment culture temperature	25 ̊C
[Ref.: #25056]	Isolation/enrichment procedure	standard dilution plating technique
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT347096 (>99% sequence identity) for Spirosoma soli subclade from Microbeatlas

Aquatic Samples	21
Soil Samples	37
Animal Samples	24
Plant Samples	7
Total Samples	89

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25056]	Spirosoma sp. MIMBbqt12 16S ribosomal RNA gene, partial sequence	KT347096	1406	GenBank	1770529 tax ID

[Ref.: #25056]

GC-content

49.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #25056]

Culture collection no.

MCCC 1K01308, KCTC 42805

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma sordidisoli sp. nov., a propanil-degrading bacterium isolated from a herbicide-contaminated soil.	Zhang L, Zhou XY, Su XJ, Hu Q, Jiang JD	Antonie Van Leeuwenhoek	10.1007/s10482-019-01278-4	2019	*
Phylogeny	Spirosoma metallicus sp. nov., isolated from an automobile air conditioning system.	Lee H, Kim DU, Lee S, Park S, Yoon JH, Park SY, Ka JO	J Microbiol	10.1007/s12275-017-7162-4	2017	*
Phylogeny	Spirosoma lacussanchae sp. nov., a phosphate-solubilizing bacterium isolated from a freshwater reservoir.	Li Y, Ai MJ, Sun Y, Zhang YQ, Zhang JQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001778	2017	*
Phylogeny	Spirosoma soli sp. nov., isolated from biological soil crusts.	Yang SS, Tang K, Zhang X, Wang J, Wang X, Feng F, Li H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001558	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25056

S. S. T. Yang, K.,Zhang, X.,Wang, J.,Wang, X.,Feng, F.,Li, H.: Spirosoma soli sp. nov., isolated from biological soil crusts. IJSEM 66: 5568 - 5574 2016 ( DOI 10.1099/ijsem.0.001558 , PubMed 27902187 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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