Silicimonas algicola (DSM 103371, RCC 4681, KC90B)

Name: Silicimonas algicola (DSM 103371, RCC 4681, KC90B)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133213

Type strain

Strain Designation KC90B

Culture col. no. DSM 103371 RCC 4681 KC90B

NCBI tax ID(s) 1826607

Special Collections DSMZ Literature strains MaCuMBA DZIF

Links

Silicimonas algicola KC90B is an aerobe, Gram-negative, pleomorphic-shaped prokaryote that forms circular colonies and was isolated from silica cell wall of Thalassiosira delicatula RCC 2565, a marine diatom originating from Roscoff; offshore seawater.

Gram-negative pleomorphic-shaped colony-forming aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 399564

RCC4681,DSM 103371

@ref 20215

Last LPSN update 2025-12-16 10:01:43

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Silicimonas

Species Silicimonas algicola

Full scientific name Silicimonas algicola Crenn et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
25009	negative	0.2-17.0 µm	0.2-0.5 µm	pleomorphic-shaped
125438	negative
125439	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25009	0.3-1.0 mm	beige	circular	14 days	MA agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
25009	MA agar
64139	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture temp

@ref	Growth	Type	Temperature (°C)
25009	positive	growth	10-40
25009	positive	optimum	25
25009	negative	growth	4
25009	negative	growth	45
64139	positive	growth	25

Culture pH

@ref	Ability	Type	PH
25009	positive	optimum	6.5-7.5
25009	positive	growth	6.0-9.0
25009		growth	5.5
25009		growth	9.5

Physiology and metabolism

Oxygen tolerance

25009

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25009	NaCl		growth	0 %
25009	NaCl	positive	growth	0.5-4.0 %(w/v)
25009	NaCl		optimum	1.5-2.0 %(w/v)
25009	NaCl		growth	4.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25009	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
25009	17426 ChEBI	5-dehydro-D-gluconate	-	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
25009	27613 ChEBI	amygdalin	-	carbon source
25009	18305 ChEBI	arbutin	+	carbon source
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
25009	17057 ChEBI	cellobiose	-	carbon source
25009	17057 ChEBI	cellobiose	-	assimilation
25009	17108 ChEBI	D-arabinose	-	carbon source
25009	18333 ChEBI	D-arabitol	-	carbon source
25009	15824 ChEBI	D-fructose	-	carbon source
25009	15824 ChEBI	D-fructose	-	assimilation
25009	28847 ChEBI	D-fucose	-	carbon source
25009	12936 ChEBI	D-galactose	-	carbon source
25009	12936 ChEBI	D-galactose	-	assimilation
25009	17634 ChEBI	D-glucose	-	carbon source
25009	17634 ChEBI	D-glucose	-	assimilation
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
25009	16899 ChEBI	D-mannitol	-	carbon source
25009	16899 ChEBI	D-mannitol	-	assimilation
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
25009	16024 ChEBI	D-mannose	-	carbon source
25009	16024 ChEBI	D-mannose	-	assimilation
25009	16024 ChEBI	D-mannose	+	carbon source
25009	16024 ChEBI	D-mannose	+	assimilation
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
25009	16988 ChEBI	D-ribose	-	carbon source
25009	16988 ChEBI	D-ribose	-	assimilation
25009	17924 ChEBI	D-sorbitol	-	carbon source
25009	17924 ChEBI	D-sorbitol	-	assimilation
25009	16443 ChEBI	D-tagatose	-	carbon source
25009	65327 ChEBI	D-xylose	-	carbon source
25009	65327 ChEBI	D-xylose	-	assimilation
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
25009	17113 ChEBI	erythritol	-	carbon source
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
25009		esculin ferric citrate	+	carbon source
25009	16813 ChEBI	galactitol	-	carbon source
25009	5291 ChEBI	gelatin	-	assimilation
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
25009	28066 ChEBI	gentiobiose	-	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
25009	17754 ChEBI	glycerol	-	carbon source
25009	17754 ChEBI	glycerol	-	assimilation
25009	28087 ChEBI	glycogen	-	carbon source
25009	15443 ChEBI	inulin	-	carbon source
25009	30849 ChEBI	L-arabinose	-	carbon source
25009	30849 ChEBI	L-arabinose	-	assimilation
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
25009	18403 ChEBI	L-arabitol	-	carbon source
25009	16467 ChEBI	L-arginine	-	assimilation
25009	18287 ChEBI	L-fucose	-	carbon source
25009	62320 ChEBI	L-lyxose	-	carbon source
25009	62345 ChEBI	L-rhamnose	-	carbon source
25009	62345 ChEBI	L-rhamnose	-	assimilation
25009	17266 ChEBI	L-sorbose	-	carbon source
25009	65328 ChEBI	L-xylose	-	carbon source
25009	17716 ChEBI	lactose	-	carbon source
25009	17716 ChEBI	lactose	-	assimilation
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
25009	17306 ChEBI	maltose	-	carbon source
25009	17306 ChEBI	maltose	-	assimilation
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
25009	6731 ChEBI	melezitose	-	carbon source
25009	28053 ChEBI	melibiose	-	carbon source
25009	320061 ChEBI	methyl alpha-D-glucopyranoside	-	carbon source
25009	43943 ChEBI	methyl alpha-D-mannoside	-	carbon source
25009	74863 ChEBI	methyl beta-D-xylopyranoside	-	carbon source
25009	17268 ChEBI	myo-inositol	-	carbon source
25009	17268 ChEBI	myo-inositol	-	assimilation
25009	506227 ChEBI	N-acetylglucosamine	-	carbon source
25009	506227 ChEBI	N-acetylglucosamine	-	assimilation
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
25009	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
25009	32032 ChEBI	potassium gluconate	-	carbon source
25009	16634 ChEBI	raffinose	-	carbon source
25009	16634 ChEBI	raffinose	-	assimilation
25009	15963 ChEBI	ribitol	-	carbon source
25009	17814 ChEBI	salicin	-	carbon source
25009	53258 ChEBI	sodium citrate	-	assimilation
25009	28017 ChEBI	starch	-	carbon source
25009	17992 ChEBI	sucrose	-	carbon source
25009	27082 ChEBI	trehalose	-	carbon source
25009	27082 ChEBI	trehalose	-	assimilation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
25009	32528 ChEBI	turanose	-	carbon source
25009	16199 ChEBI	urea	-	assimilation
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
25009	17151 ChEBI	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite
25009	28971	ampicillin
25009	17698	chloramphenicol
25009	48923	erythromycin
25009	17833	gentamicin
25009	6104	kanamycin
25009	100147	nalidixic acid
25009	7507	neomycin
25009	18208	penicillin g
25009	17076	streptomycin
25009	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
25009	acid phosphatase	+	3.1.3.2
25009	alkaline phosphatase	+	3.1.3.1
25009	alpha-chymotrypsin	-	3.4.21.1
25009	alpha-fucosidase	-	3.2.1.51
25009	alpha-galactosidase	-	3.2.1.22
25009	alpha-glucosidase	+	3.2.1.20
25009	alpha-mannosidase	-	3.2.1.24
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
25009	beta-galactosidase	+	3.2.1.23
25009	beta-glucosidase	+	3.2.1.21
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
25009	beta-glucuronidase	-	3.2.1.31
25009	catalase	+	1.11.1.6
25009	cystine arylamidase	-	3.4.11.3
25009	cytochrome oxidase	+	1.9.3.1
25009	esterase (C 4)	+
25009	esterase lipase (C 8)	+
68369	gelatinase	-		from API 20NE
25009	leucine arylamidase	+	3.4.11.1
25009	lipase (C 14)	+
25009	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25009	naphthol-AS-BI-phosphohydrolase	+
25009	trypsin	-	3.4.21.4
68369	urease	-	3.5.1.5	from API 20NE
25009	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	starch degradation	100	10 of 10
66794	ceramide biosynthesis	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	quinate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	octane oxidation	100	3 of 3
66794	pentose phosphate pathway	90.91	10 of 11
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	glycogen metabolism	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	purine metabolism	79.79	75 of 94
66794	photosynthesis	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B12 metabolism	76.47	26 of 34
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	pyrimidine metabolism	73.33	33 of 45
66794	d-xylose degradation	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	NAD metabolism	72.22	13 of 18
66794	glutathione metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	tyrosine metabolism	71.43	10 of 14
66794	citric acid cycle	71.43	10 of 14
66794	degradation of pentoses	71.43	20 of 28
66794	threonine metabolism	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	urea cycle	69.23	9 of 13
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	lipid A biosynthesis	66.67	6 of 9
66794	IAA biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	methane metabolism	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	phenol degradation	65	13 of 20
66794	oxidative phosphorylation	64.84	59 of 91
66794	lipid metabolism	64.52	20 of 31
66794	proline metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	carnitine metabolism	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	elloramycin biosynthesis	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	glycolysis	58.82	10 of 17
66794	tryptophan metabolism	57.89	22 of 38
66794	non-pathway related	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	degradation of sugar acids	56	14 of 25
66794	degradation of hexoses	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	androgen and estrogen metabolism	50	8 of 16
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	biotin biosynthesis	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	resorcinol degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ascorbate metabolism	50	11 of 22
66794	ribulose monophosphate pathway	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	polyamine pathway	43.48	10 of 23
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	lysine metabolism	42.86	18 of 42
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	cellulose degradation	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	nitrate assimilation	33.33	3 of 9
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	cholesterol biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
64139	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Microbial	#Zooplankton

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
25009	silica cell wall of Thalassiosira delicatula RCC 2565, a marine diatom originating from Roscoff offshore seawater	north off Roscoff, western English Channel	France	FRA	Europe	48	-3 48/-3	2011-01
64139	silica cell wall of the marine diatom Thalassiosira delicatula collected from coastal surface water	western English Channel, north off Roscoff, station SOMLIT-Astan (48° 45' N 3° 57' W)	France	FRA	Europe	48.75	-3.95 48.75/-3.95

Taxonmaps

69479

Global distribution of 16S sequence KU926270 (>99% sequence identity) for Silicimonas algicola subclade from Microbeatlas

Aquatic Samples	3091
Soil Samples	27
Animal Samples	17
Plant Samples	3
Total Samples	3138

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64139	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM397073v1 assembly for Silicimonas algicola KC90	complete	GCA_003970735	1826607.5	2836961719	1826607	99.23
66792	ASM314876v1 assembly for Silicimonas algicola DSM 103371	scaffold	GCA_003148765	1826607.3	2756170270	1826607	73.3

Genome browser: GCA_003970735

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64139	Silicimonas algicola strain KC90B 16S ribosomal RNA gene, partial sequence	KU926270	1395		1826607

GC content

@ref	GC-content (mol%)	Method
25009	65.2	genome sequence analysis
64139	65.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Silicimonas algicola DSM 103371
NCBI: GCA_003148765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	62.10	no
125439	gram_stain	BacteriaNetⓘ	negative	96.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Silicimonas algicola strain KC90
PATRIC: 1826607.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	yes
125438	anaerobic	anaerobicⓘ	no	93.16	yes
125438	spore-forming	spore-formingⓘ	no	85.49	no
125438	aerobic	aerobicⓘ	yes	82.87	no
125438	thermophilic	thermophileⓘ	no	96.05	no
125438	flagellated	motile2+ⓘ	no	60.44	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.	Crenn K, Bunk B, Sproer C, Overmann J, Jeanthon C	Microbiol Resour Announc	10.1128/MRA.00108-19	2019
Phylogeny	Silicimonas algicola gen. nov., sp. nov., a member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula.	Crenn K, Serpin D, Lepleux C, Overmann J, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001394	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25009	K. S. Crenn, D.,Lepleux, C.,Overmann, J.,Jeanthon, C.: Silicimonas algicola gen. nov., sp. nov., a member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula. IJSEM 66: 4580 - 4588 2016 ( DOI 10.1099/ijsem.0.001394 , PubMed 27498967 )
#64139	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103371
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Silicimonas algicola (DSM 103371, RCC 4681, KC90B)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003970735

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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