Name: Silicimonas algicola KC90B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133213

Type strain:

Species: Silicimonas algicola

Strain Designation: KC90B

Culture col. no.: DSM 103371, RCC 4681

Strain history: <- C. Jeanthon, CNRS & Sorbonne Universités, Station Biologique Roscoff <- K. Crenn, CNRS & Sorbonne Universités, Station Biologique Roscoff; KC90B

NCBI tax ID(s): 1826607 (species)

Section

Silicimonas algicola KC90B is an aerobe, Gram-negative, pleomorphic-shaped bacterium that forms circular colonies and was isolated from silica cell wall of Thalassiosira delicatula RCC 2565, a marine diatom originating from Roscoff; offshore seawater.

colony-forming
Gram-negative
pleomorphic-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	Rhodobacteraceae
	Genus	*Silicimonas*
	Species	**Silicimonas algicola**
	Full Scientific Name (PNU)	Silicimonas algicola Crenn et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25009]	Gram stain	negative
[Ref.: #25009]	Cell length	0.2-17.0 µm
[Ref.: #25009]	Cell width	0.2-0.5 µm
[Ref.: #25009]	Cell shape	pleomorphic-shaped
[Ref.: #25009]	Motility	no

[Ref.: #25009]	Colony size	0.3-1.0 mm
[Ref.: #25009]	Colony color	beige
[Ref.: #25009]	Colony shape	circular
[Ref.: #25009]	Incubation period	14 days
[Ref.: #25009]	Cultivation medium used	MA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25009]

Culture medium

MA agar

[Ref.: #25009]

Culture medium growth

[Ref.: #64139]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64139]

Culture medium growth

[Ref.: #64139]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #64139]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #25009]		growth	10-40 °C
[Ref.: #25009]		optimum	25 °C
[Ref.: #25009]	no	growth	4 °C
[Ref.: #25009]	no	growth	45 °C
[Ref.: #64139]		growth	25 °C

[Ref.: #25009]	Temperature range	mesophilic
[Ref.: #25009]	Temperature range	psychrophilic
[Ref.: #25009]	Temperature range	thermophilic
[Ref.: #64139]	Temperature range	mesophilic

	Kind of pH		pH	pH range
[Ref.: #25009]		optimum	6.5-7.5
[Ref.: #25009]		growth	6.0-9.0	alkaliphile
[Ref.: #25009]	no	growth	5.5
[Ref.: #25009]	no	growth	9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25009]

Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #25009]	NaCl	no	growth	0	%
[Ref.: #25009]	NaCl		growth	0.5-4.0	%(w/v)
[Ref.: #25009]	NaCl		optimum	1.5-2.0	%(w/v)
[Ref.: #25009]	NaCl	no	growth	4.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25009]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #25009]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	amygdalin ChEBI	-	carbon source
[Ref.: #25009]	arbutin ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #25009]	cellobiose ChEBI	-	carbon source
[Ref.: #25009]	cellobiose ChEBI	-	assimilation
[Ref.: #25009]	D-arabinose ChEBI	-	carbon source
[Ref.: #25009]	D-arabitol ChEBI	-	carbon source
[Ref.: #25009]	D-fructose ChEBI	-	carbon source
[Ref.: #25009]	D-fructose ChEBI	-	assimilation
[Ref.: #25009]	D-fucose ChEBI	-	carbon source
[Ref.: #25009]	D-galactose ChEBI	-	carbon source
[Ref.: #25009]	D-galactose ChEBI	-	assimilation
[Ref.: #25009]	D-glucose ChEBI	-	carbon source
[Ref.: #25009]	D-glucose ChEBI	-	assimilation
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #25009]	D-mannitol ChEBI	-	carbon source
[Ref.: #25009]	D-mannitol ChEBI	-	assimilation
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	D-mannose ChEBI	-	carbon source
[Ref.: #25009]	D-mannose ChEBI	-	assimilation
[Ref.: #25009]	D-mannose ChEBI	+	carbon source
[Ref.: #25009]	D-mannose ChEBI	+	assimilation
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	D-ribose ChEBI	-	carbon source
[Ref.: #25009]	D-ribose ChEBI	-	assimilation
[Ref.: #25009]	D-sorbitol ChEBI	-	carbon source
[Ref.: #25009]	D-sorbitol ChEBI	-	assimilation
[Ref.: #25009]	D-tagatose ChEBI	-	carbon source
[Ref.: #25009]	D-xylose ChEBI	-	carbon source
[Ref.: #25009]	D-xylose ChEBI	-	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	erythritol ChEBI	-	carbon source
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #25009]	esculin ferric citrate	+	carbon source
[Ref.: #25009]	galactitol ChEBI	-	carbon source
[Ref.: #25009]	gelatin ChEBI	-	assimilation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #25009]	gentiobiose ChEBI	-	carbon source
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	glycerol ChEBI	-	carbon source
[Ref.: #25009]	glycerol ChEBI	-	assimilation
[Ref.: #25009]	glycogen ChEBI	-	carbon source
[Ref.: #25009]	inulin ChEBI	-	carbon source
[Ref.: #25009]	L-arabinose ChEBI	-	carbon source
[Ref.: #25009]	L-arabinose ChEBI	-	assimilation
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	L-arabitol ChEBI	-	carbon source
[Ref.: #25009]	L-arginine ChEBI	-	assimilation
[Ref.: #25009]	L-fucose ChEBI	-	carbon source
[Ref.: #25009]	L-lyxose ChEBI	-	carbon source
[Ref.: #25009]	L-rhamnose ChEBI	-	carbon source
[Ref.: #25009]	L-rhamnose ChEBI	-	assimilation
[Ref.: #25009]	L-sorbose ChEBI	-	carbon source
[Ref.: #25009]	L-xylose ChEBI	-	carbon source
[Ref.: #25009]	lactose ChEBI	-	carbon source
[Ref.: #25009]	lactose ChEBI	-	assimilation
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	maltose ChEBI	-	carbon source
[Ref.: #25009]	maltose ChEBI	-	assimilation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	melezitose ChEBI	-	carbon source
[Ref.: #25009]	melibiose ChEBI	-	carbon source
[Ref.: #25009]	methyl alpha-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #25009]	methyl alpha-D-mannoside ChEBI	-	carbon source
[Ref.: #25009]	methyl beta-D-xylopyranoside ChEBI	-	carbon source
[Ref.: #25009]	myo-inositol ChEBI	-	carbon source
[Ref.: #25009]	myo-inositol ChEBI	-	assimilation
[Ref.: #25009]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #25009]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #25009]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #25009]	potassium gluconate ChEBI	-	carbon source
[Ref.: #25009]	raffinose ChEBI	-	carbon source
[Ref.: #25009]	raffinose ChEBI	-	assimilation
[Ref.: #25009]	ribitol ChEBI	-	carbon source
[Ref.: #25009]	salicin ChEBI	-	carbon source
[Ref.: #25009]	sodium citrate ChEBI	-	assimilation
[Ref.: #25009]	starch ChEBI	-	carbon source
[Ref.: #25009]	sucrose ChEBI	-	carbon source
[Ref.: #25009]	trehalose ChEBI	-	carbon source
[Ref.: #25009]	trehalose ChEBI	-	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #25009]	turanose ChEBI	-	carbon source
[Ref.: #25009]	urea ChEBI	-	assimilation
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #25009]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25009]	ampicillin ChEBI	yes
[Ref.: #25009]	chloramphenicol ChEBI	yes
[Ref.: #25009]	erythromycin ChEBI	yes
[Ref.: #25009]	gentamicin ChEBI	yes
[Ref.: #25009]	kanamycin ChEBI	yes
[Ref.: #25009]	nalidixic acid ChEBI	no
[Ref.: #25009]	neomycin ChEBI	yes
[Ref.: #25009]	penicillin g ChEBI	yes
[Ref.: #25009]	streptomycin ChEBI	yes
[Ref.: #25009]	tetracycline ChEBI	yes

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #25009]	acid phosphatase	+	3.1.3.2
[Ref.: #25009]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25009]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25009]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25009]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25009]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25009]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #25009]	beta-galactosidase	+	3.2.1.23
[Ref.: #25009]	beta-glucosidase	+	3.2.1.21
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #25009]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25009]	catalase	+	1.11.1.6
[Ref.: #25009]	cystine arylamidase	-	3.4.11.3
[Ref.: #25009]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25009]	esterase (C 4)	+
[Ref.: #25009]	esterase lipase (C 8)	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #25009]	leucine arylamidase	+	3.4.11.1
[Ref.: #25009]	lipase (C 14)	+
[Ref.: #25009]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25009]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25009]	trypsin	-	3.4.21.4
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #25009]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64139]	21875	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+/-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	purine metabolism	79.79	75 of 94
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B12 metabolism	76.47	26 of 34
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	alanine metabolism	72.41	21 of 29
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	threonine metabolism	70	7 of 10
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	lipid A biosynthesis	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	66.67	6 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	elloramycin biosynthesis	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	androgen and estrogen metabolism	50	8 of 16
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	ascorbate metabolism	50	11 of 22
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	lysine metabolism	42.86	18 of 42
[Ref.: #66794]	tetrahydrofolate metabolism	42.86	6 of 14
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	glycine betaine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25009]	Sample type/isolated from	silica cell wall of Thalassiosira delicatula RCC 2565, a marine diatom originating from Roscoff offshore seawater
[Ref.: #25009]	Geographic location (country and/or sea, region)	north off Roscoff, western English Channel
[Ref.: #25009]	Country	France
[Ref.: #25009]	Country ISO 3 Code	FRA
[Ref.: #25009]	Continent	Europe
[Ref.: #25009]	Geographic location	48.0000°/-3.0000°
[Ref.: #25009]	Isolation date	2011-01

[Ref.: #64139]	Sample type/isolated from	silica cell wall of the marine diatom Thalassiosira delicatula collected from coastal surface water
[Ref.: #64139]	Geographic location (country and/or sea, region)	western English Channel, north off Roscoff, station SOMLIT-Astan (48° 45' N 3° 57' W)
[Ref.: #64139]	Country	France
[Ref.: #64139]	Country ISO 3 Code	FRA
[Ref.: #64139]	Continent	Europe
[Ref.: #64139]	Geographic location	48.7500°/-3.9500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Microbial	#Zooplankton

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU926270 (>99% sequence identity) for Silicimonas algicola subclade from Microbeatlas

Aquatic Samples	3091
Soil Samples	27
Animal Samples	17
Plant Samples	3
Total Samples	3138

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64139]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64139]	Silicimonas algicola strain KC90BT 16S ribosomal RNA gene, partial sequence	KU926270	1395	ENA	1826607 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Silicimonas algicola DSM 103371	GCA_003148765	scaffold	GenBank	1826607 tax ID	*
[Ref.: #66792]	Silicimonas algicola strain DSM 103371	1826607.3	wgs	PATRIC	1826607 tax ID	*
[Ref.: #66792]	Silicimonas algicola strain KC90	1826607.5	complete	PATRIC	1826607 tax ID	*
[Ref.: #66792]	Silicimonas algicola DSM 103371	2756170270	draft	JGI IMG/M	1826607 tax ID	*

[Ref.: #25009]	GC-content	65.2 mol%	genome sequence analysis
[Ref.: #64139]	GC-content	65.2 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #64139]

Culture collection no.

DSM 103371, RCC 4681

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Silicimonas algicola gen. nov., sp. nov., a member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula.	Crenn K, Serpin D, Lepleux C, Overmann J, Jeanthon C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001394	2016	*
Genetics	Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.	Crenn K, Bunk B, Sproer C, Overmann J, Jeanthon C	Microbiol Resour Announc	10.1128/MRA.00108-19	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25009

K. S. Crenn, D.,Lepleux, C.,Overmann, J.,Jeanthon, C.: Silicimonas algicola gen. nov., sp. nov., a member of the Roseobacter clade isolated from the cell surface of the marine diatom Thalassiosira delicatula. IJSEM 66: 4580 - 4588 2016 ( DOI 10.1099/ijsem.0.001394 , PubMed 27498967 )

#64139

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103371

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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