Name: Arvibacter flaviflagrans C-1-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133190

Type strain:

Species: Arvibacter flaviflagrans

Strain Designation: C-1-16

Culture col. no.: KEMB 900-374, KACC 18717, JCM 31293

Strain history: J. Kim; Kyonggi Univ., South Korea; C-1-16.

NCBI tax ID(s): 1813470 (species)

Section

Arvibacter flaviflagrans C-1-16 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from from a forest soil sample.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Arvibacter*
	Species	**Arvibacter flaviflagrans**
	Full Scientific Name (LPSN)	Arvibacter flaviflagrans Chaudhary and Kim 2016

Information on morphological and physiological properties Morphology

[Ref.: #24985]	Gram stain	negative

[Ref.: #24985]	Cell length	3.3-4.2 µm

[Ref.: #24985]	Cell width	0.65-0.95 µm

[Ref.: #24985]	Cell shape	rod-shaped

[Ref.: #24985]	Motility	yes

[Ref.: #24985]	Colony size	1.0-2.0 mm
[Ref.: #24985]	Colony color	yellow
[Ref.: #24985]	Colony shape	circular
[Ref.: #24985]	Incubation period	5 days
[Ref.: #24985]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

[Ref.: #24985]	Pigment production	yes
[Ref.: #24985]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (lysogeny broth) agar

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Culture medium growth

		Temperature
[Ref.: #24985]	growth	15.0-43.0 °C
[Ref.: #24985]	optimum	25.0-40.0 °C
[Ref.: #67770]	growth	30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #24985]			optimum	6.5-8.0
[Ref.: #24985]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Salt		Salt conc.
[Ref.: #24985]	NaCl	growth	0.0-0.5	%(w/v)
[Ref.: #24985]	NaCl	maximum	0.5	%(w/v)
[Ref.: #24985]	NaCl	optimum	0	%(w/v)

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Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24985]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #24985]	3-hydroxybenzoate ChEBI	-	builds acid from
[Ref.: #24985]	3-hydroxybutyrate ChEBI	-	builds acid from
[Ref.: #24985]	4-hydroxybenzoate ChEBI	-	builds acid from
[Ref.: #24985]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #24985]	adipate ChEBI	-	assimilation
[Ref.: #24985]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #24985]	casein	-	hydrolysis
[Ref.: #24985]	chitin ChEBI	-	hydrolysis
[Ref.: #24985]	D-glucose ChEBI	+	assimilation
[Ref.: #24985]	D-glucose ChEBI	+	builds acid from
[Ref.: #24985]	D-mannitol ChEBI	-	assimilation
[Ref.: #24985]	D-mannitol ChEBI	-	builds acid from
[Ref.: #24985]	D-mannose ChEBI	+	assimilation
[Ref.: #24985]	D-ribose ChEBI	-	builds acid from
[Ref.: #24985]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #24985]	decanoate ChEBI	-	assimilation
[Ref.: #24985]	decanoate ChEBI	-	builds acid from
[Ref.: #24985]	dna ChEBI	+	hydrolysis
[Ref.: #24985]	esculin ChEBI	+	hydrolysis
[Ref.: #24985]	gelatin ChEBI	-	hydrolysis
[Ref.: #24985]	glucose ChEBI	-	fermentation
[Ref.: #24985]	glucose ChEBI	+	fermentation
[Ref.: #24985]	glycogen ChEBI	+	builds acid from
[Ref.: #24985]	itaconate ChEBI	-	builds acid from
[Ref.: #24985]	L-alanine ChEBI	-	builds acid from
[Ref.: #24985]	L-arabinose ChEBI	-	assimilation
[Ref.: #24985]	L-arabinose ChEBI	-	builds acid from
[Ref.: #24985]	L-fucose ChEBI	-	builds acid from
[Ref.: #24985]	L-histidine ChEBI	-	builds acid from
[Ref.: #24985]	L-proline ChEBI	-	builds acid from
[Ref.: #24985]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #24985]	L-serine ChEBI	-	builds acid from
[Ref.: #24985]	lactate ChEBI	-	builds acid from
[Ref.: #24985]	malate ChEBI	-	assimilation
[Ref.: #24985]	maltose ChEBI	+	assimilation
[Ref.: #24985]	maltose ChEBI	+	builds acid from
[Ref.: #24985]	melibiose ChEBI	+	builds acid from
[Ref.: #24985]	myo-inositol ChEBI	-	builds acid from
[Ref.: #24985]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #24985]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #24985]	nitrate ChEBI	-	reduction
[Ref.: #24985]	phenylacetate ChEBI	-	assimilation
[Ref.: #24985]	potassium gluconate ChEBI	-	assimilation
[Ref.: #24985]	propionate ChEBI	-	builds acid from
[Ref.: #24985]	salicin ChEBI	-	builds acid from
[Ref.: #24985]	sodium acetate ChEBI	-	builds acid from
[Ref.: #24985]	sodium citrate ChEBI	-	assimilation
[Ref.: #24985]	sodium citrate ChEBI	-	builds acid from
[Ref.: #24985]	sodium malonate ChEBI	-	builds acid from
[Ref.: #24985]	starch ChEBI	-	hydrolysis
[Ref.: #24985]	suberic acid ChEBI	-	builds acid from
[Ref.: #24985]	sucrose ChEBI	-	builds acid from
[Ref.: #24985]	tryptophan ChEBI	-	energy source
[Ref.: #24985]	tween 40 ChEBI	-	hydrolysis
[Ref.: #24985]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24985]	tyrosine ChEBI	+	hydrolysis
[Ref.: #24985]	valerate ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24985]	ampicillin ChEBI		yes
[Ref.: #24985]	chloramphenicol ChEBI		yes
[Ref.: #24985]	cycloheximide ChEBI		yes
[Ref.: #24985]	gentamicin ChEBI		yes
[Ref.: #24985]	kanamycin ChEBI	yes
[Ref.: #24985]	nalidixic acid ChEBI		yes
[Ref.: #24985]	neomycin ChEBI		yes
[Ref.: #24985]	novobiocin ChEBI		yes
[Ref.: #24985]	penicillin ChEBI		yes
[Ref.: #24985]	rifampicin ChEBI	yes
[Ref.: #24985]	streptomycin ChEBI		yes
[Ref.: #24985]	sulfamethoxazole ChEBI		yes
[Ref.: #24985]	tetracycline ChEBI	yes
[Ref.: #24985]	trimethoprim ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #24985]	acetoin ChEBI	no
[Ref.: #24985]	hydrogen sulfide ChEBI	no
[Ref.: #24985]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24985]	acetoin ChEBI	-
[Ref.: #24985]	glucose ChEBI		-
[Ref.: #24985]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24985]	acid phosphatase	+	3.1.3.2
[Ref.: #24985]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24985]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #24985]	alpha-fucosidase	+	3.2.1.51
[Ref.: #24985]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24985]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24985]	alpha-mannosidase	+	3.2.1.24
[Ref.: #24985]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24985]	beta-galactosidase	+	3.2.1.23
[Ref.: #24985]	beta-glucosidase	+	3.2.1.21
[Ref.: #24985]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24985]	catalase	-	1.11.1.6
[Ref.: #24985]	cystine arylamidase	+	3.4.11.3
[Ref.: #24985]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24985]	esterase (C 4)	+
[Ref.: #24985]	esterase Lipase (C 8)	+
[Ref.: #24985]	leucine arylamidase	+	3.4.11.1
[Ref.: #24985]	lipase (C 14)	-
[Ref.: #24985]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #24985]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24985]	trypsin	+	3.4.21.4
[Ref.: #24985]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24985]	urease	-	3.5.1.5
[Ref.: #24985]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24985]	Sample type/isolated from	from a forest soil sample
[Ref.: #24985]	Geographic location (country and/or sea, region)	Kyonggi University, Suwon
[Ref.: #24985]	Country	Republic of Korea
[Ref.: #24985]	Country ISO 3 Code	KOR
[Ref.: #24985]	Continent	Asia
[Ref.: #24985]	Enrichment culture	R2A agar (Reasoner's 2A agar)
[Ref.: #24985]	Enrichment culture duration	7 days
[Ref.: #24985]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Forest soil
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24985]	Arvibacter flaviflagrans strain C-1-16 16S ribosomal RNA gene, partial sequence	KU312691	1470	GenBank	1813470 tax ID

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GC-content

45.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24985]

Culture collection no.

KEMB 900-374, KACC 18717, JCM 31293

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Foetidibacter luteolus gen. nov., sp. nov., isolated from the rhizosphere of Salvia miltiorrhiza.	Pu Q, Zeng GH, Wang GW, Lu LE, Li A, Cheng XR, Wang XY, Li O, Sun C, Hu XF	Arch Microbiol	10.1007/s00203-020-02123-3	2021	*
Phylogeny	Deminuibacter soli gen. nov., sp. nov., isolated from forest soil, and reclassification of Filimonas aurantiibacter as Arvibacter aurantiibacter comb. nov.	Wang C, Lv Y, Li A, Bao G, Feng G, Zhang J, Tan Z, Zhu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003374	2019	*
Phylogeny	Arvibacter flaviflagrans gen. nov., sp. nov., isolated from forest soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001354	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24985

D. K. K. Chaudhary, Jaisoo: Arvibacter flaviflagrans gen. nov., sp. nov., isolated from forest soil. IJSEM 66: 4347 - 4354 2016 ( DOI 10.1099/ijsem.0.001354 , PubMed 27473423 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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