Name: Nonomuraea ceibae MCCC 1K03213
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133109

Type strain:

Species: Nonomuraea ceibae

Culture col. no.: MCCC 1K03213, KCTC 39826, XMU 110

NCBI tax ID(s): 1935170 (species)

Section

Nonomuraea ceibae MCCC 1K03213 is an aerobe, spore-forming, Gram-positive bacterium that builds substrate mycelia and was isolated from rhizosphere soil of a flowering tree, Ceiba speciosa.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea ceibae**
	Full Scientific Name (LPSN)	Nonomuraea ceibae Wang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25301]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #25301]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.03

[Ref.: #25301]	Pigment production	no
[Ref.: #25301]	Pigment name	diffusible pigment

[Ref.: #25301]	Multicellular complex forming ability	yes
[Ref.: #25301]	Multicellular complex name	substrate mycelia
[Ref.: #25301]	Multicellular complex color	pink or yellowish-white

[Ref.: #25301]	Multicellular complex name	aerial mycelia
[Ref.: #25301]	Multicellular complex color	white or pink
[Ref.: #25301]	Multicellular complex further description	non-fragmented

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25301]

Culture medium

ISP2

[Ref.: #25301]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25301]			growth	15-45 °C
[Ref.: #25301]			optimum	37 °C

[Ref.: #25301]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25301]			optimum	7
[Ref.: #25301]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25301]

Oxygen tolerance

aerobe

[Ref.: #25301]	Spore description	hooked spore chains on aerial mycelium
[Ref.: #25301]	Type of spore	spore
[Ref.: #25301]	Ability of spore formation	yes
[Ref.: #25301]	Spore description	elliptical spores
[Ref.: #25301]	Type of spore	spore
[Ref.: #25301]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25301]		NaCl	maximum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25301]	casein	+	hydrolysis
[Ref.: #25301]	cellobiose ChEBI	+	carbon source
[Ref.: #25301]	D-arabinose ChEBI	+	carbon source
[Ref.: #25301]	D-fructose ChEBI	+	carbon source
[Ref.: #25301]	D-glucose ChEBI	+	carbon source
[Ref.: #25301]	D-mannose ChEBI	+	carbon source
[Ref.: #25301]	D-xylose ChEBI	+	carbon source
[Ref.: #25301]	gelatin ChEBI	-	degradation
[Ref.: #25301]	hypoxanthine ChEBI	+	degradation
[Ref.: #25301]	L-rhamnose ChEBI	+	carbon source
[Ref.: #25301]	milk	+
[Ref.: #25301]	milk	+	degradation
[Ref.: #25301]	myo-inositol ChEBI	-	carbon source
[Ref.: #25301]	nitrate ChEBI	+	reduction
[Ref.: #25301]	raffinose ChEBI	-	carbon source
[Ref.: #25301]	starch ChEBI	+	hydrolysis
[Ref.: #25301]	sucrose ChEBI	-	carbon source
[Ref.: #25301]	urea ChEBI	-	degradation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25301]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #25301]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25301]	esterase (C 4)	+
[Ref.: #25301]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25301]

Fatty acid	Percentage
10-Methyl C17:0	22.3
C16:0 iso	17.1
C17:1ω8c	9.5
C16:1 iso G	6.9
C17:1ω6c	5.7
C16:0	4.5
C16:1ω6c / C16:1ω7c	3.8
C15:0 iso	3.8
10-Methyl C16:0 / iso-C17:1ω9c	2.7
C14:0	2.7
C17:0	2.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25301]	Sample type/isolated from	rhizosphere soil of a flowering tree, Ceiba speciosa
[Ref.: #25301]	Geographic location (country and/or sea, region)	Wuyuan Bay of Xiamen City, Fujian Province, south-east China
[Ref.: #25301]	Country	China
[Ref.: #25301]	Country ISO 3 Code	CHN
[Ref.: #25301]	Continent	Asia
[Ref.: #25301]	Geographic location	24.0000°/118.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25301]	16S rRNA gene sequences	KX024666	1437	ENA	1935170 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonomuraea ceibae KCTC 39826	GCA_019396325	scaffold	GenBank	1935170 tax ID	*
[Ref.: #66792]	Nonomuraea ceibae strain KCTC 39826	1935170.3	wgs	PATRIC	1935170 tax ID	*

[Ref.: #25301]

GC-content

66.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonomuraea ceibae KCTC 39826 NCBI: GCA_019396325.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonomuraea ceibae KCTC 39826 NCBI: GCA_019396325.1
[Ref.: #69480]	flagellated	no	97.582	yes
[Ref.: #69480]	gram-positive	yes	90.536	no
[Ref.: #69480]	anaerobic	no	99.243	yes
[Ref.: #69480]	aerobic	yes	92.104	yes
[Ref.: #69480]	halophile	no	90.26	no
[Ref.: #69480]	spore-forming	yes	95.463	yes
[Ref.: #69480]	motile	no	91.038	yes
[Ref.: #69480]	thermophile	no	97.815	yes
[Ref.: #69480]	glucose-util	yes	86.677	yes
[Ref.: #69480]	glucose-ferment	no	91.967	no

Availability in culture collections External links

[Ref.: #25301]

Culture collection no.

MCCC 1K03213, KCTC 39826, XMU 110

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea ceibae sp. nov., an actinobacterium isolated from Ceiba speciosa rhizosphere.	Wang F, Shi J, Huang Y, Wu Y, Deng X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001782	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25301

F. S. Wang, J.,Huang, Y.,Wu, Y.,Deng, X.: Nonomuraea ceibae sp. nov., an actinobacterium isolated from Ceiba speciosa rhizosphere. IJSEM 67: 1158 - 1162 2017 ( DOI 10.1099/ijsem.0.001782 , PubMed 28073396 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nonomuraea ceibae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Nonomuraea ceibae KCTC 39826

Nonomuraea ceibae KCTC 39826

Change proposal

Change proposal