Name: Mucilaginibacter yixingensis yx-36
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132970

Type strain:

Species: Mucilaginibacter yixingensis

Strain Designation: yx-36

Culture col. no.: DSM 26809, CCTCC AB 2012880

Strain history: <- H. Cao, Nanjing Agric. Univ., China; yx-36 <- Yiting-Jing <- P. Wang

NCBI tax ID(s): 1295612 (species)

SI-ID 399561

DSM 26809

Section

Mucilaginibacter yixingensis yx-36 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil from a vegetable plot.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter yixingensis**
	Full Scientific Name (LPSN)	Mucilaginibacter yixingensis Jing et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43682]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43682]	Cell length	1.25-2.3 µm

[Ref.: #43682]	Cell width	0.65-0.75 µm

[Ref.: #43682]	Cell shape	rod-shaped

[Ref.: #43682]	Motility	no

[Ref.: #43682]	Colony color	Light yellow
[Ref.: #43682]	Colony shape	circular
[Ref.: #43682]	Cultivation medium used	R2A agar

[Ref.: #43682]	Pigment production	yes
[Ref.: #43682]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43682]

Culture medium

Low-nutrient media

[Ref.: #43682]

Culture medium growth

[Ref.: #43682]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43682]

Culture medium growth

[Ref.: #24758]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24758]

Culture medium growth

[Ref.: #24758]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24758]

Culture medium composition

expand / minimize

[Ref.: #43682]

Culture medium

Dnase test agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #24758]	growth	28 °C
[Ref.: #43682]	growth	15-37 °C
[Ref.: #43682]	optimum	37 °C

[Ref.: #24758]	Temperature range	mesophilic
[Ref.: #43682]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43682]			optimum	6.5
[Ref.: #43682]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43682]

Oxygen tolerance

aerobe

[Ref.: #43682]	Type of spore	endospore
[Ref.: #43682]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.949

[Ref.: #43682]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43682]		NaCl		growth	0-1	%(w/v)
[Ref.: #43682]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43682]	2,3-butanediol ChEBI	-	respiration
[Ref.: #43682]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43682]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43682]	2-oxobutanoate ChEBI	+	respiration
[Ref.: #43682]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #43682]	2-oxopentanoate ChEBI	+	respiration
[Ref.: #43682]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43682]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #43682]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43682]	acetate ChEBI	-	respiration
[Ref.: #43682]	adipate ChEBI	-	assimilation
[Ref.: #43682]	alginate ChEBI	-	hydrolysis
[Ref.: #43682]	alpha-cyclodextrin ChEBI	+	respiration
[Ref.: #43682]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #43682]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43682]	alpha-D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #43682]	alpha-lactose ChEBI	+	respiration
[Ref.: #43682]	amygdalin ChEBI	-	builds acid from
[Ref.: #43682]	arabinose ChEBI	+	assimilation
[Ref.: #43682]	arbutin ChEBI	-	builds acid from
[Ref.: #43682]	beta-hydroxybutyrate ChEBI	-	respiration
[Ref.: #43682]	bromosuccinate ChEBI	-	respiration
[Ref.: #43682]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43682]	cellobiose ChEBI	-	builds acid from
[Ref.: #43682]	cellobiose ChEBI	+	respiration
[Ref.: #43682]	cis-aconitate ChEBI	-	respiration
[Ref.: #43682]	citrate ChEBI	-	respiration
[Ref.: #43682]	D-alanine ChEBI	-	respiration
[Ref.: #43682]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43682]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43682]	D-arabitol ChEBI	-	respiration
[Ref.: #43682]	D-fructose ChEBI	+	respiration
[Ref.: #43682]	D-fucose ChEBI	-	builds acid from
[Ref.: #43682]	D-galactonate ChEBI	-	respiration
[Ref.: #43682]	D-galactose ChEBI	+	respiration
[Ref.: #43682]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #43682]	D-gluconate ChEBI	-	respiration
[Ref.: #43682]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #43682]	D-glucuronate ChEBI	+	respiration
[Ref.: #43682]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43682]	D-mannitol ChEBI	-	respiration
[Ref.: #43682]	D-mannose ChEBI	+	respiration
[Ref.: #43682]	D-psicose ChEBI	-	respiration
[Ref.: #43682]	D-saccharate ChEBI	-	respiration
[Ref.: #43682]	D-serine ChEBI	-	respiration
[Ref.: #43682]	D-sorbitol ChEBI	-	respiration
[Ref.: #43682]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43682]	D-xylose ChEBI	+	builds acid from
[Ref.: #43682]	decanoate ChEBI	-	assimilation
[Ref.: #43682]	dextrin ChEBI	+	respiration
[Ref.: #43682]	DL-carnitine ChEBI	-	respiration
[Ref.: #43682]	erythritol ChEBI	-	builds acid from
[Ref.: #43682]	erythritol ChEBI	-	respiration
[Ref.: #43682]	esculin ChEBI	+	builds acid from
[Ref.: #43682]	esculin ChEBI	+	hydrolysis
[Ref.: #43682]	ethanolamine ChEBI	-	respiration
[Ref.: #43682]	formate ChEBI	-	respiration
[Ref.: #43682]	fructose ChEBI	-	builds acid from
[Ref.: #43682]	galactitol ChEBI	-	builds acid from
[Ref.: #43682]	galactose ChEBI	-	builds acid from
[Ref.: #43682]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #43682]	gelatin ChEBI	-	hydrolysis
[Ref.: #43682]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43682]	gentiobiose ChEBI	+	respiration
[Ref.: #43682]	gluconate ChEBI	-	builds acid from
[Ref.: #43682]	glucose ChEBI	-	builds acid from
[Ref.: #43682]	glucose ChEBI	+	assimilation
[Ref.: #43682]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #43682]	glucuronamide ChEBI	-	respiration
[Ref.: #43682]	glycerol ChEBI	-	builds acid from
[Ref.: #43682]	glycerol ChEBI	-	respiration
[Ref.: #43682]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #43682]	glycogen ChEBI	-	builds acid from
[Ref.: #43682]	glycogen ChEBI	-	respiration
[Ref.: #43682]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #43682]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #43682]	hydroxyproline ChEBI	-	respiration
[Ref.: #43682]	inosine ChEBI	-	respiration
[Ref.: #43682]	inulin ChEBI	-	builds acid from
[Ref.: #43682]	itaconate ChEBI	-	respiration
[Ref.: #43682]	L-alaninamide ChEBI	-	respiration
[Ref.: #43682]	L-alanine ChEBI	-	respiration
[Ref.: #43682]	L-alanylglycine ChEBI	-	respiration
[Ref.: #43682]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43682]	L-arabinose ChEBI	+	respiration
[Ref.: #43682]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43682]	L-asparagine ChEBI	-	respiration
[Ref.: #43682]	L-aspartate ChEBI	-	respiration
[Ref.: #43682]	L-fucose ChEBI	+	builds acid from
[Ref.: #43682]	L-fucose ChEBI	+	respiration
[Ref.: #43682]	L-glutamate ChEBI	+	respiration
[Ref.: #43682]	L-histidine ChEBI	-	respiration
[Ref.: #43682]	L-leucine ChEBI	-	respiration
[Ref.: #43682]	L-ornithine ChEBI	-	respiration
[Ref.: #43682]	L-phenylalanine ChEBI	-	respiration
[Ref.: #43682]	L-proline ChEBI	+	respiration
[Ref.: #43682]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #43682]	L-rhamnose ChEBI	-	respiration
[Ref.: #43682]	L-serine ChEBI	+	respiration
[Ref.: #43682]	L-threonine ChEBI	+	respiration
[Ref.: #43682]	L-xylose ChEBI	-	builds acid from
[Ref.: #43682]	lactate ChEBI	+	respiration
[Ref.: #43682]	lactose ChEBI	-	builds acid from
[Ref.: #43682]	lactulose ChEBI	+	respiration
[Ref.: #43682]	malate ChEBI	-	assimilation
[Ref.: #43682]	malonate ChEBI	-	respiration
[Ref.: #43682]	maltose ChEBI	+	assimilation
[Ref.: #43682]	maltose ChEBI	+	builds acid from
[Ref.: #43682]	maltose ChEBI	+	respiration
[Ref.: #43682]	mannitol ChEBI	-	assimilation
[Ref.: #43682]	mannitol ChEBI	-	builds acid from
[Ref.: #43682]	mannose ChEBI	-	builds acid from
[Ref.: #43682]	mannose ChEBI	+	assimilation
[Ref.: #43682]	melezitose ChEBI	-	builds acid from
[Ref.: #43682]	melibiose ChEBI	-	builds acid from
[Ref.: #43682]	melibiose ChEBI	+	respiration
[Ref.: #43682]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43682]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #43682]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43682]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43682]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43682]	monomethyl succinate ChEBI	-	respiration
[Ref.: #43682]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43682]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #43682]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43682]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43682]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43682]	nitrate ChEBI	-	reduction
[Ref.: #43682]	pectin ChEBI	-	hydrolysis
[Ref.: #43682]	phenylacetate ChEBI	-	assimilation
[Ref.: #43682]	phenylethylamine ChEBI	-	respiration
[Ref.: #43682]	propionate ChEBI	-	respiration
[Ref.: #43682]	putrescine ChEBI	-	respiration
[Ref.: #43682]	quinate ChEBI	-	respiration
[Ref.: #43682]	raffinose ChEBI	-	builds acid from
[Ref.: #43682]	raffinose ChEBI	-	respiration
[Ref.: #43682]	rhamnose ChEBI	-	builds acid from
[Ref.: #43682]	ribitol ChEBI	-	builds acid from
[Ref.: #43682]	ribitol ChEBI	-	respiration
[Ref.: #43682]	ribose ChEBI	+	builds acid from
[Ref.: #43682]	salicin ChEBI	-	builds acid from
[Ref.: #43682]	sebacic acid ChEBI	-	respiration
[Ref.: #43682]	sodium citrate ChEBI	-	assimilation
[Ref.: #43682]	sorbitol ChEBI	-	builds acid from
[Ref.: #43682]	sorbose ChEBI	-	builds acid from
[Ref.: #43682]	starch ChEBI	-	builds acid from
[Ref.: #43682]	starch ChEBI	-	hydrolysis
[Ref.: #43682]	succinamate ChEBI	-	respiration
[Ref.: #43682]	succinate ChEBI	-	respiration
[Ref.: #43682]	sucrose ChEBI	-	builds acid from
[Ref.: #43682]	sucrose ChEBI	-	respiration
[Ref.: #43682]	thymidine ChEBI	-	respiration
[Ref.: #43682]	trehalose ChEBI	-	builds acid from
[Ref.: #43682]	trehalose ChEBI	+	respiration
[Ref.: #43682]	turanose ChEBI	-	builds acid from
[Ref.: #43682]	turanose ChEBI	+	respiration
[Ref.: #43682]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43682]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43682]	tween 40 ChEBI	-	respiration
[Ref.: #43682]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43682]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43682]	tween 80 ChEBI	-	respiration
[Ref.: #43682]	uridine ChEBI	+	respiration
[Ref.: #43682]	urocanic acid ChEBI	-	respiration
[Ref.: #43682]	xylan ChEBI	-	hydrolysis
[Ref.: #43682]	xylitol ChEBI	-	builds acid from
[Ref.: #43682]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43682]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43682]	carbenicillin ChEBI				yes	100	µg (disc)
[Ref.: #43682]	cefixime ChEBI				yes	5	µg (disc)
[Ref.: #43682]	chloramphenicol ChEBI				yes	5	µg (disc)
[Ref.: #43682]	doxycycline ChEBI	yes	30	µg (disc)
[Ref.: #43682]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43682]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #43682]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43682]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43682]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43682]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #43682]	penicillin ChEBI	yes	10	µg (disc)
[Ref.: #43682]	polymyxin b ChEBI	yes	300	µg (disc)
[Ref.: #43682]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43682]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43682]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43682]	vancomycin ChEBI				yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43682]		acetoin ChEBI	yes
[Ref.: #43682]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43682]	acid phosphatase	+	3.1.3.2
[Ref.: #43682]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43682]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43682]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43682]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43682]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43682]	beta-D-fucosidase	+	3.2.1.38
[Ref.: #43682]	beta-galactosidase	+	3.2.1.23
[Ref.: #43682]	beta-glucosidase	+	3.2.1.21
[Ref.: #43682]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43682]	catalase	+	1.11.1.6
[Ref.: #43682]	chymotrypsin	-	3.4.4.5
[Ref.: #43682]	cystine arylamidase	+	3.4.11.3
[Ref.: #43682]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43682]	esterase (C 4)	-
[Ref.: #43682]	esterase Lipase (C 8)	-
[Ref.: #43682]	leucine arylamidase	+	3.4.11.1
[Ref.: #43682]	lipase (C 14)	-
[Ref.: #43682]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43682]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43682]	trypsin	-	3.4.21.4
[Ref.: #43682]	urease	-	3.5.1.5
[Ref.: #43682]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43682]

Fatty acid	Percentage
C15:0 iso	19.5
C15:1 iso G	15.8
C17:0 iso 3OH	9.4
C15:0 anteiso	7.2
C16:0 iso	5.9
iso-C16:0G	4.9
C16:1ω7c / C15:0 iso 2OH	3.6
C16:0 iso 3OH	3.2
C15:0 2OH	3.1
C15:0	3
C14:0 iso	2.6
C17:1ω6c	2.4
C16:0	2.2
C15:1 anteiso A	2.1
C17:0 2OH	1.4
C16:0 3OH	1.3
C17:0 3OH	1.3
C15:0 iso 3OH	1
C16:0 2OH	1

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	O-antigen biosynthesis	80	4 of 5
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	purine metabolism	76.6	72 of 94
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	degradation of sugar acids	76	19 of 25
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	isoprenoid biosynthesis	69.23	18 of 26
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	cysteine metabolism	61.11	11 of 18
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	lysine metabolism	59.52	25 of 42
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	tyrosine metabolism	57.14	8 of 14
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	non-pathway related	52.63	20 of 38
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	oxidative phosphorylation	45.05	41 of 91
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24758]	Sample type/isolated from	soil from a vegetable plot
[Ref.: #24758]	Geographic location (country and/or sea, region)	Jiangsu province, Yixing (31° 21' 36'' N 119° 49' 12''E)
[Ref.: #24758]	Country	China
[Ref.: #24758]	Country ISO 3 Code	CHN
[Ref.: #24758]	Continent	Asia
[Ref.: #24758]	Geographic location	31.3600°/119.8200°

[Ref.: #43682]	Sample type/isolated from	A vegetable plot
[Ref.: #43682]	Geographic location (country and/or sea, region)	Yixing, Jiangsu Province
[Ref.: #43682]	Country	China
[Ref.: #43682]	Country ISO 3 Code	CHN
[Ref.: #43682]	Continent	Asia
[Ref.: #43682]	Geographic location	31.3600°/119.8200°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC480578 (>99% sequence identity) for Mucilaginibacter yixingensis subclade from Microbeatlas

Aquatic Samples	31
Soil Samples	198
Animal Samples	71
Plant Samples	65
Total Samples	365

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24758]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24758]	Mucilaginibacter yixingensis strain YX-36 16S ribosomal RNA gene, partial sequence	KC480578	1444	ENA	1295612 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mucilaginibacter yixingensis DSM 26809	GCA_003050755	contig	GenBank	1295612 tax ID	*
[Ref.: #66792]	Mucilaginibacter yixingensis strain DSM 26809	1295612.3	wgs	PATRIC	1295612 tax ID	*
[Ref.: #66792]	Mucilaginibacter yixingensis DSM 26809	2734482263	draft	JGI IMG/M	1295612 tax ID	*

[Ref.: #24758]

GC-content

47.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mucilaginibacter yixingensis strain DSM 26809 PATRIC: 1295612.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter yixingensis strain DSM 26809 PATRIC: 1295612.3
[Ref.: #69480]	motile	no	91.056	no
[Ref.: #69480]	gram-positive	no	97.413	yes
[Ref.: #69480]	anaerobic	no	99.476	yes
[Ref.: #69480]	aerobic	yes	92.528	yes
[Ref.: #69480]	halophile	no	97.094	no
[Ref.: #69480]	spore-forming	no	94.069	yes
[Ref.: #69480]	thermophile	no	97.398	no
[Ref.: #69480]	glucose-util	yes	89.606	no
[Ref.: #69480]	flagellated	no	97.48	yes
[Ref.: #69480]	glucose-ferment	no	89.382	no

Availability in culture collections External links

[Ref.: #24758]

Culture collection no.

DSM 26809, CCTCC AB 2012880

[Ref.: #91247]

SI-ID 399561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter terrenus sp. nov., isolated from manganese mine soil.	Zhou Z, Dong Y, Xia X, Wu S, Huang Y, Liao S, Wang G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003592	2019	*
Phylogeny	Mucilaginibacter yixingensis sp. nov., isolated from vegetable soil.	Jing YT, Wang P, Zhang H, Dong WL, Jing YJ, Xiao YL, Cao H	Int J Syst Evol Microbiol	10.1099/ijsem.0.000941	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24758

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26809

#43682

Yi-Ting Jing, Ping Wang, Hao Zhang, Wei-Liang Dong, Yin-Juan Jing, Yong-Liang Xiao, Hui Cao: Mucilaginibacter yixingensis sp. nov., isolated from vegetable soil. IJSEM 66: 1779 - 1784 2016 ( DOI 10.1099/ijsem.0.000941 , PubMed 26827674 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91247

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399561.1 )

* These data were automatically processed and therefore are not curated

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Mucilaginibacter yixingensis strain DSM 26809

Mucilaginibacter yixingensis strain DSM 26809

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