Name: Microvirga makkahensis SV1470
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132878

Type strain:

Species: Microvirga makkahensis

Strain Designation: SV1470

Culture col. no.: DSM 25394, KCTC 23863, NRRL B-24875

Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Samsun, Turkey; SV1470 <- M. Camas

NCBI tax ID(s): 1128670 (species)

SI-ID 399957

DSM 25394

Section

Microvirga makkahensis SV1470 is a mesophilic, motile bacterium that was isolated from arid soil.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Microvirga*
	Species	**Microvirga makkahensis**
	Full Scientific Name (LPSN)	Microvirga makkahensis Veyisoglu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #69480]	Motility	yes Confidence in %92.494

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24666]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24666]

Culture medium growth

[Ref.: #24666]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24666]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24666]			growth	28 °C

[Ref.: #24666]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24666]	Sample type/isolated from	arid soil
[Ref.: #24666]	Geographic location (country and/or sea, region)	Makkah (Mekka), Hira Cave (21° 27' 25.69'' N 39° 51' 33.04'' E)
[Ref.: #24666]	Country	Saudi Arabia
[Ref.: #24666]	Country ISO 3 Code	SAU
[Ref.: #24666]	Continent	Asia
[Ref.: #24666]	Geographic location	21.4571°/39.8592°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24666]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24666]	Microvirga makkahensis strain SV1470 16S ribosomal RNA gene, partial sequence	JN989300	1435	ENA	1128670 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microvirga makkahensis KCTC 23863	GCA_009830105	contig	GenBank	1128670 tax ID	*
[Ref.: #66792]	Microvirga makkahensis strain KCTC 23863	1128670.3	wgs	PATRIC	1128670 tax ID	*
[Ref.: #66792]	Microvirga makkahensis KCTC 23863	2894293875	draft	JGI IMG/M	1128670 tax ID	*

[Ref.: #24666]

GC-content

61.5 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microvirga makkahensis strain KCTC 23863 PATRIC: 1128670.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microvirga makkahensis strain KCTC 23863 PATRIC: 1128670.3
[Ref.: #69480]	motile	yes	73.745	no
[Ref.: #69480]	flagellated	no	74.28	no
[Ref.: #69480]	gram-positive	no	98.118	no
[Ref.: #69480]	anaerobic	no	96.804	no
[Ref.: #69480]	aerobic	yes	89.087	no
[Ref.: #69480]	halophile	no	88.258	no
[Ref.: #69480]	spore-forming	no	93.626	no
[Ref.: #69480]	glucose-util	yes	85.382	no
[Ref.: #69480]	thermophile	no	93.765	yes
[Ref.: #69480]	glucose-ferment	no	90.806	no

Availability in culture collections External links

[Ref.: #24666]

Culture collection no.

DSM 25394, KCTC 23863, NRRL B-24875

[Ref.: #91160]

SI-ID 399957

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microvirga makkahensis sp. nov., and Microvirga arabica sp. nov., isolated from sandy arid soil.	Veyisoglu A, Tatar D, Saygin H, Inan K, Cetin D, Guven K, Tuncer M, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-015-0631-z	2015	*
Phylogeny	Microvirga arsenatis sp. nov., an arsenate reduction bacterium isolated from Tibet hot spring sediments.	Liu ZT, Xian WD, Li MM, Liu L, Ming YZ, Jiao JY, Fang BZ, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-020-01421-6	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24666

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25394

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91160

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399957.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Microvirga makkahensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Microvirga makkahensis strain KCTC 23863

Microvirga makkahensis strain KCTC 23863

Change proposal

Change proposal