Name: Amycolatopsis bartoniae SF26
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13284

Type strain:

Species: Amycolatopsis bartoniae

Strain Designation: SF26

Culture col. no.: DSM 45807, NCIMB 14706, NRRL B-24846

Strain history: <- J. Swezey, NRRL; NRRL B-24846 <- S. Frank

NCBI tax ID(s): 941986 (species)

SI-ID 403278

DSM 45807

Special Collections

DSMZ

Section

Amycolatopsis bartoniae SF26 is a Gram-positive bacterium that was isolated from dry sandy soil.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis bartoniae**
	Full Scientific Name (LPSN)	Amycolatopsis bartoniae Zucchi et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18257]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18257]

Culture medium growth

[Ref.: #18257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18257]

Culture medium composition

expand / minimize

[Ref.: #18257]

Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

[Ref.: #18257]

Culture medium growth

[Ref.: #18257]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18257]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18257]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #18257]	25158	-	-	-	-	-	+	+	+	+	+/-	+	+/-	+	+/-	+	-	+/-	+	+/-	+	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18257]	14281	-	-	+/-	-	-	+	-	-	-	+/-	-	+/-	-	-	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18257]	Sample type/isolated from	dry sandy soil
[Ref.: #18257]	Geographic location (country and/or sea, region)	Kings Canyon
[Ref.: #18257]	Country	Australia
[Ref.: #18257]	Country ISO 3 Code	AUS
[Ref.: #18257]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ651729 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	7
Soil Samples	97
Animal Samples	14
Plant Samples	1
Total Samples	119

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18257]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18257]	Amycolatopsis bartoniae strain SF26 16S ribosomal RNA gene, partial sequence	HQ651729	1429	GenBank ENA	941986 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Amycolatopsis bartoniae DSM 45807	GCA_014191255	contig	GenBank ENA	941986 tax ID	*
[Ref.: #66792]	Amycolatopsis bartoniae DSM 45807	GCA_007713755	contig	GenBank ENA	941986 tax ID	*
[Ref.: #66792]	Amycolatopsis bartoniae strain DSM 45807	941986.4	wgs	PATRIC	941986 tax ID	*
[Ref.: #66792]	Amycolatopsis bartoniae strain DSM 45807	941986.5	wgs	PATRIC	941986 tax ID	*
[Ref.: #66792]	Amycolatopsis bartoniae DSM 45807	2824178761	draft	JGI IMG/M	941986 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis bartoniae strain DSM 45807 PATRIC: 941986.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.812	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.89	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.098	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	74.108	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.39	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84.1	no

Availability in culture collections External links

[Ref.: #18257]

Culture collection no.

DSM 45807, NCIMB 14706, NRRL B-24846

[Ref.: #82485]

SI-ID 403278

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis acididurans sp. nov., isolated from peat swamp forest soil in Thailand.	Teo WFA, Lipun K, Srisuk N, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-020-00382-2	2020	*
Phylogeny	Amycolatopsis acidicola sp. nov., isolated from peat swamp forest soil.	Teo WFA, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003933	2020	*
Phylogeny	Amycolatopsis bartoniae sp. nov. and Amycolatopsis bullii sp. nov., mesophilic actinomycetes isolated from arid Australian soils.	Zucchi TD, Bonda AN, Frank S, Kim BY, Kshetrimayum JD, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9716-0	2012	*

References

#18257

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45807

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82485

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403278.1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis bartoniae strain DSM 45807

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