Amycolatopsis bartoniae (DSM 45807, NCIMB 14706, NRRL B-24846)

Name: Amycolatopsis bartoniae (DSM 45807, NCIMB 14706, NRRL B-24846)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13284

Type strain

Strain Designation SF26

Culture col. no. DSM 45807 NCIMB 14706 NRRL B-24846 SF26

NCBI tax ID(s) 941986

Special Collections DSMZ

Links

Amycolatopsis bartoniae SF26 is a mesophilic prokaryote that was isolated from dry sandy soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403278

DSM 45807

@ref 20215

Last LPSN update 2025-12-16 09:50:03

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis bartoniae

Full scientific name Amycolatopsis bartoniae Zucchi et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18257	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18257	BENNETT'S AGAR (DSMZ Medium 548)		Medium recipe at MediaDive	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
18257	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
18257	-	-	+/-	-	-	+	-	-	-	+/-	-	+/-	-	-	-	-	+	+	+	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
18257	-	-	-	-	-	+	+	+	+	+/-	+	+/-	+	+/-	+	-	+/-	+	+/-	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18257	dry sandy soil	Kings Canyon	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence HQ651729 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	7
Soil Samples	97
Animal Samples	14
Plant Samples	1
Total Samples	119

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18257	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	AMYBAR_230605_v1 assembly for Amycolatopsis bartoniae DSM 45807	complete	GCA_046603725			941986	96.15
66792	ASM1419125v1 assembly for Amycolatopsis bartoniae DSM 45807	contig	GCA_014191255	941986.5	2824178761	941986	72.52
66792	ASM771375v1 assembly for Amycolatopsis bartoniae DSM 45807	contig	GCA_007713755	941986.4	8119168151	941986	43.99

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18257	Amycolatopsis bartoniae strain SF26 16S ribosomal RNA gene, partial sequence	HQ651729	1429		941986
124043	Amycolatopsis bartoniae strain DSM 45807 16S ribosomal RNA gene, partial sequence.	MN399889	1519		941986

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Amycolatopsis bartoniae DSM 45807
NCBI: GCA_014191255

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.40	no
125439	motility	BacteriaNetⓘ	no	85.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis bartoniae strain DSM 45807
PATRIC: 941986.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.81	no
125438	anaerobic	anaerobicⓘ	no	97.89	no
125438	aerobic	aerobicⓘ	yes	89.10	no
125438	spore-forming	spore-formingⓘ	yes	74.11	no
125438	thermophilic	thermophileⓘ	no	96.39	no
125438	flagellated	motile2+ⓘ	no	84.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Assembly of Amycolatopsis bartoniae DSM 45807^T Allows the Characterization of a Novel Glycopeptide Biosynthetic Gene Cluster.	Stepanyshyn A, Ruckert-Reed C, Busche T, Yaruta B, Andreo-Vidal A, Marinelli F, Kalinowski J, Yushchuk O.	Genes (Basel)	10.3390/genes15121651	2024
	Genomic Insights into the Distribution and Phylogeny of Glycopeptide Resistance Determinants within the Actinobacteria Phylum.	Andreo-Vidal A, Binda E, Fedorenko V, Marinelli F, Yushchuk O.	Antibiotics (Basel)	10.3390/antibiotics10121533	2021
Phylogeny	Amycolatopsis acididurans sp. nov., isolated from peat swamp forest soil in Thailand.	Teo WFA, Lipun K, Srisuk N, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-020-00382-2	2020
Phylogeny	Amycolatopsis acidicola sp. nov., isolated from peat swamp forest soil.	Teo WFA, Srisuk N, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.003933	2020
Phylogeny	Amycolatopsis bartoniae sp. nov. and Amycolatopsis bullii sp. nov., mesophilic actinomycetes isolated from arid Australian soils.	Zucchi TD, Bonda AN, Frank S, Kim BY, Kshetrimayum JD, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-012-9716-0	2012

References

#18257	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45807
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Amycolatopsis bartoniae (DSM 45807, NCIMB 14706, NRRL B-24846)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_046603725

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media