Corynebacterium pollutisoli (DSM 100104, KCTC 39687, MCC 2722)

Name: Corynebacterium pollutisoli (DSM 100104, KCTC 39687, MCC 2722)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132609

Type strain

Strain Designation VDS11

Culture col. no. DSM 100104 KCTC 39687 MCC 2722 VDS11

NCBI tax ID(s) 1610489

Special Collections DSMZ KCTC Literature strains

History DSMZ <- L. Rup, Univ. Delhi, Dept. Zoology, India; VDS11 <- V. Negi

Links

Corynebacterium pollutisoli VDS11 is an aerobe, Gram-positive, ovoid-shaped bacterium that forms circular colonies and was isolated from soil from a hexachlorocyclohexane dumpsite.

Gram-positive ovoid-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 412119

KCTC 39687,CCUG 73585

@ref 20215

Last LPSN update 2026-05-29 08:37:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium pollutisoli

Full scientific name Corynebacterium pollutisoli Negi et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43107	positive	0.75 µm	0.51 µm	ovoid-shaped
125438						91

Colony morphology

@ref	Colony color	Colony shape	Medium used
43107	pale yellow	circular	LB agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43107	LB (Luria-Bertani) MEDIUM
43107	trypticase soy broth agar (TSBA)
43107	nutritient agar (NA)
43107	Reasoner's 2A agar (R2A)
43107	tryptone soya yeast extract agar
43107	xanthine agar
43107	hypoxanthine agar

Culture temp

@ref	Growth	Type	Temperature (°C)
43107	positive	optimum	28
43107	positive	growth	10-45

Culture pH

@ref	Ability	Type	PH	PH range
43107	positive	optimum	8
43107	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

43107

Oxygen toleranceaerobe

Spore formation

43107

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43107	NaCl	positive	growth	0-10 %(w/v)
43107	NaCl	positive	optimum	6 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43107	5291 ChEBI	gelatin	+	hydrolysis
43107	17234 ChEBI	glucose	+	fermentation
43107	28087 ChEBI	glycogen	-	fermentation
43107	17716 ChEBI	lactose	-	fermentation
43107	17306 ChEBI	maltose	-	fermentation
43107	29864 ChEBI	mannitol	-	fermentation
43107	17632 ChEBI	nitrate	+	reduction
43107	33942 ChEBI	ribose	+	fermentation
43107	17992 ChEBI	sucrose	-	fermentation
43107	18222 ChEBI	xylose	-	fermentation

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43107	2637	amikacin	30 µg (disc)
43107	28971	ampicillin		10 µg (disc)
43107	17698	chloramphenicol		30 µg (disc)
43107	100241	ciprofloxacin	5 µg (disc)
43107	17833	gentamicin	10 µg (disc)
43107	6104	kanamycin	30 µg (disc)
43107	100147	nalidixic acid		30 µg (disc)
43107	27701	oxytetracycline	30 µg (disc)
43107	18208	penicillin g	10 µg (disc)
43107	8309	polymyxin b		300 µg (disc)
43107	28077	rifampicin	5 µg (disc)
43107	27902	tetracycline	30 µg (disc)
43107	28001	vancomycin	30 µg (disc)

Enzymes

@ref	Value	Activity	Ec
43107	alkaline phosphatase	+	3.1.3.1
43107	alpha-glucosidase	-	3.2.1.20
43107	beta-galactosidase	-	3.2.1.23
43107	beta-glucosidase	-	3.2.1.21
43107	beta-glucuronidase	+	3.2.1.31
43107	catalase	-	1.11.1.6
43107	cytochrome oxidase	-	1.9.3.1
43107	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43107	pyrazinamidase	+	3.5.1.B15
43107	pyrrolidonyl arylamidase	-	3.4.19.3
43107	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43107

Fatty acid	Percentage
C18:1ω9c	52.3
C16:0	28.3
C20:0	3
C16:1ω7c / C16:1ω6c	2.9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	-
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
24398	soil from a hexachlorocyclohexane dumpsite	Uttar Pradesh, Lucknow, Ummari Village (27° 00' 24.7'' N, 81° 08' 57.8'' E)	India	IND	Asia	27.0069	81.1494 27.0069/81.1494
43107	dumpsite soil contaminated with hexachlorocyclohexane (HCH)	Ummari village, Lucknow	India	IND	Asia	27	81 27/81	Luria-Bertani (LB) agar	supplemented with nyastin and streptomycin	2 days	28	serial dilution plating method

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2708742385 annotated assembly for Corynebacterium pollutisoli VDS11	scaffold	GCA_900177745	1610489.3	2708742385	1610489	76.28

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24398	Corynebacterium pollutisoli strain VDS11 16S ribosomal RNA gene, partial sequence	KP276149	1403		1610489

GC content

24398

GC-content (mol%)50.6

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium pollutisoli VDS11
NCBI: GCA_900177745.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.71	no
125438	anaerobic	anaerobicⓘ	no	96.17	yes
125438	aerobic	aerobicⓘ	yes	72.16	yes
125438	spore-forming	spore-formingⓘ	no	77.49	yes
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacteriumpollutisoli sp. nov., isolated from hexachlorocyclohexane-contaminated soil.	Negi V, Singh Y, Schumann P, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001228	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100104
#43107	Vivek Negi, Yogendra Singh, Peter Schumann, Rup Lal: Corynebacterium pollutisoli sp. nov., isolated from hexachlorocyclohexane-contaminated soil. IJSEM 66: 3531 - 3537 2016 ( DOI 10.1099/ijsem.0.001228 , PubMed 27267453 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium pollutisoli (DSM 100104, KCTC 39687, MCC 2722)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900177745

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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