Photobacterium sanguinicancri (DSM 24670, CAIM 1827, CECT 7579)

Name: Photobacterium sanguinicancri (DSM 24670, CAIM 1827, CECT 7579)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132601

Type strain

Strain Designation Mj110

Culture col. no. DSM 24670 CAIM 1827 CECT 7579 Mj110

NCBI tax ID(s) 875932

Special Collections DSMZ

History <- B. Gomez-Gil, CAIM, Mexico <- A. Roque, Institut de Recerca i Technologia Agroalimentaries, Santcarles de la Rapita, Catalonia, Spain

Links

Photobacterium sanguinicancri Mj110 is a bacterium that was isolated from hemolymph of healthy spider crab .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394964

DSM 24670,CECT 7579

@ref 20215

Last LPSN update 2026-02-09 11:31:45

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Photobacterium

Species Photobacterium sanguinicancri

Full scientific name Photobacterium sanguinicancri Gomez-Gil et al. 2016

BacDive ID	Other strains from **Photobacterium sanguinicancri** (1)	Type strain
132600	P. sanguinicancri Mj139, DSM 24667, CAIM 1828

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.8
125438	negative	99.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24390	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24390	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.6

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24390	hemolymph of healthy spider crab (Maja brachydactyla)	Maja brachydactyla	Galicia, Ría A Coruña at 20 m depth	Spain	ESP	Europe	43.35	-8.3667 43.35/-8.3667

Taxonmaps

69479

Global distribution of 16S sequence GQ454928 (>99% sequence identity) for Photobacterium from Microbeatlas

Aquatic Samples	201
Soil Samples	10
Animal Samples	224
Plant Samples
Total Samples	435

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434667v1 assembly for Photobacterium sanguinicancri CECT 7579	complete	GCA_024346675	875932.11	8048923410	875932	96.44
66792	ASM226526v1 assembly for Photobacterium sanguinicancri CAIM 1827	scaffold	GCA_002265265	875932.3	2873884416	875932

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24390	Photobacterium sanguinicancri strain Mj110 16S ribosomal RNA gene, partial sequence	GQ454928	1475		875932

GC content

@ref	GC-content (mol%)	Method
24390	43.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Photobacterium sanguinicancri CECT 7579
NCBI: GCA_024346675

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	yes	68.20	no
125439	gram_stain	BacteriaNetⓘ	negative	93.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Photobacterium sanguinicancri CECT 7579
NCBI: GCA_024346675.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.40	no
125438	aerobic	aerobicⓘ	no	66.83	no
125438	spore-forming	spore-formingⓘ	no	85.83	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	87.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium sanguinicancri sp. nov. isolated from marine animals.	Gomez-Gil B, Roque A, Rotllant G, Romalde JL, Doce A, Eggermont M, Defoirdt T	Antonie Van Leeuwenhoek	10.1007/s10482-016-0681-x	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24390	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24670
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Photobacterium sanguinicancri (DSM 24670, CAIM 1827, CECT 7579)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024346675

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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