Name: Photobacterium sanguinicancri Mj110
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132601

Type strain:

Species: Photobacterium sanguinicancri

Strain Designation: Mj110

Culture col. no.: DSM 24670, CAIM 1827, CECT 7579

Strain history: <- B. Gomez-Gil, CAIM, Mexico <- A. Roque, Institut de Recerca i Technologia Agroalimentaries, Santcarles de la Rapita, Catalonia, Spain

NCBI tax ID(s): 875932 (species)

Other strains from Photobacterium sanguinicancri

P. sanguinicancri Mj139, DSM 24667, CAIM 1828

Section

Photobacterium sanguinicancri Mj110 is a mesophilic, Gram-negative bacterium that was isolated from hemolymph of healthy spider crab .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium sanguinicancri**
	Full Scientific Name (LPSN)	Photobacterium sanguinicancri Gomez-Gil et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.981

[Ref.: #69480]	Motility	yes Confidence in %97.205

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24390]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #24390]

Culture medium growth

[Ref.: #24390]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24390]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24390]			growth	25 °C

[Ref.: #24390]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.672

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24390]	Sample type/isolated from	hemolymph of healthy spider crab (Maja brachydactyla)
[Ref.: #24390]	Host species	Maja brachydactyla
[Ref.: #24390]	Geographic location (country and/or sea, region)	Galicia, Ría A Coruña at 20 m depth
[Ref.: #24390]	Country	Spain
[Ref.: #24390]	Country ISO 3 Code	ESP
[Ref.: #24390]	Continent	Europe
[Ref.: #24390]	Geographic location	43.3500°/-8.3667°
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Crustacea
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ454928 (>99% sequence identity) for Photobacterium from Microbeatlas

Aquatic Samples	201
Soil Samples	10
Animal Samples	224
Plant Samples
Total Samples	435

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24390]	Photobacterium sanguinicancri strain Mj110 16S ribosomal RNA gene, partial sequence	GQ454928	1475	ENA	875932 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium sanguinicancri CAIM 1827	GCA_002265265	scaffold	GenBank	875932 tax ID	*
[Ref.: #66792]	Photobacterium sanguinicancri strain CAIM 1827	875932.3	wgs	PATRIC	875932 tax ID	*
[Ref.: #66792]	Photobacterium sanguinicancri Mj110 CAIM 1827	2873884416	draft	JGI IMG/M	875932 tax ID	*
[Ref.: #66792]	Photobacterium sanguinicancri CECT 7579	GCA_024346675	complete	GenBank	875932 tax ID	*

[Ref.: #24390]

GC-content

43.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photobacterium sanguinicancri CAIM 1827 NCBI: GCA_002265265.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium sanguinicancri CECT 7579 NCBI: GCA_024346675.1
[Ref.: #69480]	flagellated	yes	83.659	no
[Ref.: #69480]	gram-positive	no	98.915	no
[Ref.: #69480]	anaerobic	no	95.874	no
[Ref.: #69480]	aerobic	yes	51.239	no
[Ref.: #69480]	halophile	no	73.44	no
[Ref.: #69480]	spore-forming	no	93.942	no
[Ref.: #69480]	motile	yes	90.038	no
[Ref.: #69480]	glucose-ferment	yes	85.037	no
[Ref.: #69480]	thermophile	no	99.683	no
[Ref.: #69480]	glucose-util	yes	91.021	no

Availability in culture collections External links

[Ref.: #24390]

Culture collection no.

DSM 24670, CAIM 1827, CECT 7579

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium sanguinicancri sp. nov. isolated from marine animals.	Gomez-Gil B, Roque A, Rotllant G, Romalde JL, Doce A, Eggermont M, Defoirdt T	Antonie Van Leeuwenhoek	10.1007/s10482-016-0681-x	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24390

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24670

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Photobacterium sanguinicancri CAIM 1827

Photobacterium sanguinicancri CECT 7579

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