Saccharopolyspora thermophila (DSM 46801, CGMCC 4.7206, T3)

Name: Saccharopolyspora thermophila (DSM 46801, CGMCC 4.7206, T3)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132513

Type strain

Strain Designation T3

Culture col. no. DSM 46801 CGMCC 4.7206 T3 JCM 33044

NCBI tax ID(s) 89367

Special Collections DSMZ JCM Literature strains

History <- H. Wu, Guangxi University, Nanning,China; T3 CGMCC 4.7206 <-- H. Wu et al.; Guangxi Univ., China; T3.

Links

Saccharopolyspora thermophila T3 is an aerobe, Gram-positive bacterium that was isolated from soil of a sugar cane field.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400495

DSM 46801

@ref 20215

Last LPSN update 2026-02-09 11:31:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora thermophila

Full scientific name Saccharopolyspora thermophila Lu et al. 2001

Synonyms (1)

Saccharopolyspora subtropica

BacDive ID	Other strains from **Saccharopolyspora thermophila** (1)	Type strain
13457	S. thermophila 216, DSM 44575, AS 4.1511, IFO 16346, JCM ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Motility	Confidence
43984	positive
125439	positive		98.5

Colony morphology

@ref	Colony color	Medium used
43984	white	Humic acid vitamin agar
43984	white	Benett's agar
43984	white	ISP 2 agar
43984	white	ISP 3 agar
43984	white	ISP 4 agar
43984	white	ISP 5 agar
43984	white	ISP 7 agar
43984	white	Czapek's agar
43984	white	Gause's asparagine agar
43984	white	ISP 6 agar
43984	white	Potato dextrose agar
43984	white	Water agar

Pigmentation

@ref	Production	Name
43984		diffusible pigments

Multimedia

@ref:	24302
multimedia content:	DSM_46801.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46801.jpg
caption:	Medium 65 45°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43984	Bennett's agar
43984	Czapek's agar
43984	Gause's asparagine agar
43984	Humic acid vitamin agar
43984	ISP 2 agar
43984	ISP 3 agar
43984	ISP 4 agar
43984	ISP 5 agar
43984	ISP 6 agar
43984	ISP 7 agar
43984	Potato dextrose agar
43984	Water agar
24302	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24302	positive	growth	45
43984	positive	growth	25-60
43984	positive	optimum	37-50
67770	positive	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
43984	positive	optimum	7.0-9.0
43984	positive	growth	6.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43984	aerobe
125439	obligate aerobe	99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43984	NaCl	positive	growth	0-12 %(w/v)
43984	NaCl	positive	optimum	0-7 %(w/v)

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43984	16708 ChEBI	adenine	-	hydrolysis
43984	15676 ChEBI	allantoin	+	hydrolysis
43984		casein	-	hydrolysis
43984	17057 ChEBI	cellobiose	-	carbon source
43984	15824 ChEBI	D-fructose	+	carbon source
43984	12936 ChEBI	D-galactose	+	carbon source
43984	16024 ChEBI	D-mannose	+	carbon source
43984	17924 ChEBI	D-sorbitol	+	carbon source
43984	65327 ChEBI	D-xylose	-	carbon source
43984	4853 ChEBI	esculin	-	hydrolysis
43984	495056 ChEBI	gamma-cyclodextrin	-	carbon source
43984	5291 ChEBI	gelatin	+	hydrolysis
43984	17234 ChEBI	glucose	+	carbon source
43984	16235 ChEBI	guanine	+	hydrolysis
43984	17368 ChEBI	hypoxanthine	+	hydrolysis
43984	15443 ChEBI	inulin	-	carbon source
43984	30849 ChEBI	L-arabinose	+	carbon source
43984	62345 ChEBI	L-rhamnose	-	carbon source
43984	17895 ChEBI	L-tyrosine	+	hydrolysis
43984	17716 ChEBI	lactose	-	carbon source
43984		maltose hydrate	+	carbon source
43984	29864 ChEBI	mannitol	+	carbon source
43984	17268 ChEBI	myo-inositol	+	carbon source
43984	17632 ChEBI	nitrate	+	reduction
43984	17272 ChEBI	propionate	-	carbon source
43984	16634 ChEBI	raffinose	-	carbon source
43984	33942 ChEBI	ribose	+	carbon source
43984	17814 ChEBI	salicin	-	carbon source
43984	32954 ChEBI	sodium acetate	+	carbon source
43984	53258 ChEBI	sodium citrate	+	carbon source
43984	28017 ChEBI	starch	+	hydrolysis
43984	17992 ChEBI	sucrose	+	carbon source
43984	27082 ChEBI	trehalose	+	carbon source
43984	53424 ChEBI	tween 20	+	hydrolysis
43984	53423 ChEBI	tween 40	+	hydrolysis
43984	53425 ChEBI	tween 60	+	hydrolysis
43984	53426 ChEBI	tween 80	+	hydrolysis
43984	16199 ChEBI	urea	+	hydrolysis
43984	15318 ChEBI	xanthine	-	hydrolysis
43984	37166 ChEBI	xylan	-	hydrolysis
43984	17151 ChEBI	xylitol	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43984	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43984	catalase	+	1.11.1.6
43984	cytochrome oxidase	-	1.9.3.1

Fatty acid profile

Metadata FA analysis

@ref

43984

Fatty acid	Percentage
C17:0 anteiso	28.1
C17:0 iso	25.1
C16:0 iso	23.6
C17:0	4.5
C15:0 iso	4.5
C18:0	3.5
C16:0	3.2
C18:0 iso	1.8
C15:0 anteiso	1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
24302	soil of a sugar cane field	Nanning, Guangxi province (22° 39' 04'' N 108° 11' 36'' E)	China	CHN	Asia	22.6511	108.193 22.6511/108.193
43984	air-dried soil sample of a sugar cane field from Nanning	Nanning	China	CHN	Asia	22.651	108.193 22.651/108.193	modified humic acid vitamin agar	5 days	50
67770	Soil of a sugar cane field in Nanning	Guangxi Province, south-western China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24302	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464607v1 assembly for Saccharopolyspora thermophila CGMCC 4.7206	scaffold	GCA_014646075	1530170.3	2995585583	1530170	66.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24302	Saccharopolyspora subtropica strain T3 16S ribosomal RNA gene, partial sequence	KM114900	1438		1530170

GC content

@ref	GC-content (mol%)	Method
24302	71.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharopolyspora subtropica CGMCC 4.7206
NCBI: GCA_014646075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	71.30	no
125439	motility	BacteriaNetⓘ	no	84.50	no
125439	gram_stain	BacteriaNetⓘ	positive	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora subtropica CGMCC 4.7206
NCBI: GCA_014646075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.02	no
125438	anaerobic	anaerobicⓘ	no	94.49	yes
125438	aerobic	aerobicⓘ	yes	89.09	yes
125438	spore-forming	spore-formingⓘ	yes	84.38	no
125438	thermophilic	thermophileⓘ	no	85.75	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora subtropica sp. nov., a thermophilic actinomycete isolated from soil of a sugar cane field.	Wu H, Liu B, Pan S	Int J Syst Evol Microbiol	10.1099/ijsem.0.000976	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24302	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46801
#43984	Hao WuM, Bin Liu, Shangli Pan: Saccharopolyspora subtropica sp. nov., a thermophilic actinomycete isolated from soil of a sugar cane field. IJSEM 66: 1990 - 1995 2016 ( DOI 10.1099/ijsem.0.000976 , PubMed 26882893 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora thermophila (DSM 46801, CGMCC 4.7206, T3)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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