Name: Promicromonospora alba 1C-HV12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132440

Type strain:

Species: Promicromonospora alba

Strain Designation: 1C-HV12

Culture col. no.: DSM 100490, CGMCC 4.7283, JCM 31782

Strain history: CGMCC 4.7283 <-- C. Liu; Northeast Agric. Univ., China; 1C-HV12.

NCBI tax ID(s): 1616110 (species)

SI-ID 406945

DSM 100490

Section

Promicromonospora alba 1C-HV12 is an aerobe, Gram-positive, coccus-shaped bacterium that forms irregular colonies and was isolated from cuticle of the ant Camponotus japonicas Mayr.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Promicromonosporaceae*
	Genus	*Promicromonospora*
	Species	**Promicromonospora alba**
	Full Scientific Name (LPSN)	Promicromonospora alba Guo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43742]	Gram stain	positive

[Ref.: #43742]	Cell shape	coccus-shaped

[Ref.: #43742]	Motility	no

[Ref.: #43742]	Colony color	Yellow to yellowish-white
[Ref.: #43742]	Colony shape	irregular
[Ref.: #43742]	Incubation period	1-2 days
[Ref.: #43742]	Cultivation medium used	ISP 3

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43742]

Culture medium

ISP 3

[Ref.: #43742]

Culture medium growth

[Ref.: #24229]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24229]

Culture medium growth

[Ref.: #24229]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24229]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24229]	growth	28 °C
[Ref.: #43742]	growth	4-37 °C
[Ref.: #43742]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #24229]	Temperature range	mesophilic
[Ref.: #43742]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43742]			optimum	7
[Ref.: #43742]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43742]

Oxygen tolerance

aerobe

[Ref.: #43742]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43742]		NaCl		growth	0-7	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43742]	cellulose ChEBI	-	degradation
[Ref.: #43742]	creatine ChEBI	+	nitrogen source
[Ref.: #43742]	D-fructose ChEBI	-	carbon source
[Ref.: #43742]	D-galactose ChEBI	-	carbon source
[Ref.: #43742]	D-glucose ChEBI	-	carbon source
[Ref.: #43742]	D-mannitol ChEBI	+	carbon source
[Ref.: #43742]	D-mannose ChEBI	+	carbon source
[Ref.: #43742]	D-ribose ChEBI	-	carbon source
[Ref.: #43742]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43742]	D-xylose ChEBI	-	carbon source
[Ref.: #43742]	esculin ChEBI	+	hydrolysis
[Ref.: #43742]	gelatin ChEBI	+	hydrolysis
[Ref.: #43742]	glycine ChEBI	+	nitrogen source
[Ref.: #43742]	L-alanine ChEBI	-	nitrogen source
[Ref.: #43742]	L-arabinose ChEBI	-	carbon source
[Ref.: #43742]	L-arginine ChEBI	-	nitrogen source
[Ref.: #43742]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #43742]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #43742]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43742]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #43742]	L-proline ChEBI	-	nitrogen source
[Ref.: #43742]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43742]	L-serine ChEBI	-	nitrogen source
[Ref.: #43742]	L-threonine ChEBI	-	nitrogen source
[Ref.: #43742]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #43742]	lactose ChEBI	+	carbon source
[Ref.: #43742]	maltose ChEBI	+	carbon source
[Ref.: #43742]	myo-inositol ChEBI	+	carbon source
[Ref.: #43742]	nitrate ChEBI	-	reduction
[Ref.: #43742]	raffinose ChEBI	+	carbon source
[Ref.: #43742]	starch ChEBI	+	hydrolysis
[Ref.: #43742]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43742]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43742]		catalase	+	1.11.1.6
[Ref.: #43742]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24229]	Sample type/isolated from	cuticle of the ant Camponotus japonicas Mayr
[Ref.: #24229]	Host species	Camponotus japonicus
[Ref.: #24229]	Geographic location (country and/or sea, region)	Heilongjiang province, Harbin, Northeast Agricultural University
[Ref.: #24229]	Country	China
[Ref.: #24229]	Country ISO 3 Code	CHN
[Ref.: #24229]	Continent	Asia

[Ref.: #43742]	Sample type/isolated from	The cuticle of Camponotus japonicus Mayr collected from Northeast Agricultural University
[Ref.: #43742]	Geographic location (country and/or sea, region)	Harbin, Heilongjiang
[Ref.: #43742]	Country	China
[Ref.: #43742]	Country ISO 3 Code	CHN
[Ref.: #43742]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cuticle of Camponotus japonicus Mayr
[Ref.: #67770]	Host species	Camponotus japonicus
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP784765 (>99% sequence identity) for Promicromonospora from Microbeatlas

Aquatic Samples	37
Soil Samples	806
Animal Samples	117
Plant Samples	403
Total Samples	1363

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24229]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24229]	Promicromonospora alba strain 1C-HV12 16S ribosomal RNA gene, partial sequence	KP784765	1480	ENA	1616110 tax ID

[Ref.: #24229]

GC-content

71.6 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #24229]

Culture collection no.

DSM 100490, CGMCC 4.7283, JCM 31782

[Ref.: #90778]

SI-ID 406945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Promicromonospora soli sp. nov., a novel actinomycete isolated from soil.	Zheng W, Li D, Zhao J, Liu C, Zhao Y, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002207	2017	*
Phylogeny	Promicromonospora alba sp. nov., an actinomycete isolated from the cuticle of Camponotus japonicas Mayr.	Guo L, Liu C, Zhao J, Li C, Guo S, Fan J, Li J, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000885	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100490

#43742

Lifeng Guo, Chongxi Liu, Junwei Zhao, Chuang Li, Siyu Guo, Jianlong Fan, Jiansong Li, Xiangjing Wang, Wensheng Xiang: Promicromonospora alba sp. nov., an actinomycete isolated from the cuticle of Camponotus japonicas Mayr. IJSEM 66: 1340 - 1345 2016 ( DOI 10.1099/ijsem.0.000885 , PubMed 26746665 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90778

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406945.1 )

* These data were automatically processed and therefore are not curated

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