Name: Stenotrophobacter terrae Ac_28_D10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132422

Type strain:

Species: Stenotrophobacter terrae

Strain Designation: Ac_28_D10

Culture col. no.: DSM 26560, LMG 28657

Strain history: <- P. Wüst, Leibniz-Institut DSMZ GmbH, Braunschweig; Ac_28_D10

NCBI tax ID(s): 1458337 (species)

SI-ID 398791

DSM 26560

Section

Stenotrophobacter terrae Ac_28_D10 is a mesophilic bacterium that was isolated from old agricultural flood plain soil of the Savannah.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Blastocatellia*
	Order	*Blastocatellales*
	Family	*Blastocatellaceae*
	Genus	*Stenotrophobacter*
	Species	**Stenotrophobacter terrae**
	Full Scientific Name (LPSN)	Stenotrophobacter terrae Pascual et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24211]

Culture medium

SSE/HD1:10 (DSMZ Medium 1426)

[Ref.: #24211]

Culture medium growth

[Ref.: #24211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24211]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24211]			growth	28 °C

[Ref.: #24211]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24211]	24289	+	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24211]	Sample type/isolated from	old agricultural flood plain soil of the Savannah
[Ref.: #24211]	Geographic location (country and/or sea, region)	Kavango region, Mashare (17° 53' 32.4'' S, 20° 11' 15.4'' E)
[Ref.: #24211]	Country	Namibia
[Ref.: #24211]	Country ISO 3 Code	NAM
[Ref.: #24211]	Continent	Africa
[Ref.: #24211]	Geographic location	-17.8923°/20.1876°
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF840371 (>99% sequence identity) for Stenotrophobacter from Microbeatlas

Aquatic Samples	687
Soil Samples	3751
Animal Samples	640
Plant Samples	462
Total Samples	5540

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24211]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24211]	Stenotrophobacter terrae strain Ac_28_D10 16S ribosomal RNA gene, partial sequence	KF840371	1484	ENA	1458337 tax ID

[Ref.: #24211]

GC-content

58.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24211]

Culture collection no.

DSM 26560, LMG 28657

[Ref.: #90762]

SI-ID 398791

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novel isolates double the number of chemotrophic species and allow the first description of higher taxa in Acidobacteria subdivision 4.	Pascual J, Wust PK, Geppert A, Foesel BU, Huber KJ, Overmann J	Syst Appl Microbiol	10.1016/j.syapm.2015.08.001	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26560

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90762

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398791.1 )

* These data were automatically processed and therefore are not curated

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