Name: Desulforamulus reducens MI-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132391

Type strain:

Species: Desulforamulus reducens

Strain Designation: MI-1

Culture col. no.: DSM 100696, ATCC BAA-1160

Strain history: <- R. Bernier-Latmani, Ecole Polytechnique Fédérale de Lausanne, Switzerland; MI-1 <- A. Y. Obraztsova {1997}

NCBI tax ID(s): 59610 (species)

SI-ID 400534

DSM 100696

Section

Desulforamulus reducens MI-1 is a spore-forming, mesophilic, motile bacterium that was isolated from heavy metal contaminated estuarine sediment from a shipyard.

motile
rod-shaped
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulforamulus*
	Species	**Desulforamulus reducens**
	Full Scientific Name (LPSN)	Desulforamulus reducens (Visser et al. 2016) Watanabe et al. 2021

Synonym

Desulfotomaculum reducens

Information on morphological and physiological properties Morphology

[Ref.: #43783]	Cell length	5-10 µm

[Ref.: #43783]	Cell width	0.8-1 µm

[Ref.: #43783]	Cell shape	rod-shaped

[Ref.: #43783]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24180]

Culture medium

DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)

[Ref.: #24180]

Culture medium growth

[Ref.: #24180]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24180]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24180]			growth	37 °C
[Ref.: #43783]			optimum	37 °C

[Ref.: #24180]	Temperature range	mesophilic
[Ref.: #43783]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43783]			optimum	7-7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43783]	Spore description	Oval, subterminal to terminal spores are formed at the end of the exponential growth phase
[Ref.: #43783]	Type of spore	spore
[Ref.: #43783]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43783]		NaCl		optimum	0-2	g/L

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43783]	acetate ChEBI	-	assimilation
[Ref.: #43783]	butanol ChEBI	+	growth
[Ref.: #43783]	butyrate ChEBI	+	growth
[Ref.: #43783]	carbon monoxide ChEBI	-	fermentation
[Ref.: #43783]	elemental sulfur ChEBI	+	electron acceptor
[Ref.: #43783]	ethanol ChEBI	+	growth
[Ref.: #43783]	ferric iron ChEBI	+	electron acceptor
[Ref.: #43783]	fructose ChEBI	-	fermentation
[Ref.: #43783]	fructose ChEBI	+	growth
[Ref.: #43783]	fumarate ChEBI	-	fermentation
[Ref.: #43783]	glucose ChEBI	-	fermentation
[Ref.: #43783]	glucose ChEBI	+	growth
[Ref.: #43783]	lactate ChEBI	-	fermentation
[Ref.: #43783]	lactate ChEBI	+	growth
[Ref.: #43783]	manganese ChEBI	+	electron acceptor
[Ref.: #43783]	methanol ChEBI	+	growth
[Ref.: #43783]	propanol ChEBI	+	growth
[Ref.: #43783]	propionate ChEBI	+	growth
[Ref.: #43783]	pyruvate ChEBI	+	fermentation
[Ref.: #43783]	pyruvate ChEBI	+	growth
[Ref.: #43783]	sulfate ChEBI	+	electron acceptor
[Ref.: #43783]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #43783]	valerate ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24180]	Sample type/isolated from	heavy metal contaminated estuarine sediment from a shipyard
[Ref.: #24180]	Geographic location (country and/or sea, region)	California, Mare Island Naval Shipyard
[Ref.: #24180]	Country	USA
[Ref.: #24180]	Country ISO 3 Code	USA
[Ref.: #24180]	Continent	North America

[Ref.: #43783]	Sample type/isolated from	Sediments from Mare Island Naval Shipyard located in San Francisco Bay estuary, that were contaminated with high concentrations of Cr(VI) and other heavy metals
[Ref.: #43783]	Geographic location (country and/or sea, region)	San Francisco Bay estuary, California
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Heavy metal
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24180]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24180]	Desulfotomaculum reducens MI-1 16S ribosomal RNA, partial sequence	NR_102770	1544	GenBank	349161 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulforamulus reducens MI-1	GCA_000016165	complete	GenBank	349161 tax ID	*

[Ref.: #43783]	GC-content	42.3 mol%	genome sequence analysis
[Ref.: #24180]	GC-content	42.3 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulforamulus reducens MI-1 MI-1 NCBI: GCA_000016165.1
[Ref.: #69480]	motile	yes	89.811	yes
[Ref.: #69480]	flagellated	no	86.226	no
[Ref.: #69480]	gram-positive	no	84.77	no
[Ref.: #69480]	anaerobic	yes	99.279	no
[Ref.: #69480]	halophile	no	93.308	yes
[Ref.: #69480]	spore-forming	yes	95.241	no
[Ref.: #69480]	thermophile	yes	75.49	yes
[Ref.: #69480]	glucose-util	yes	86.46	yes
[Ref.: #69480]	aerobic	no	96.301	no
[Ref.: #69480]	glucose-ferment	no	84.423	yes

Availability in culture collections External links

[Ref.: #24180]

Culture collection no.

DSM 100696, ATCC BAA-1160

[Ref.: #90734]

SI-ID 400534

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24180

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100696

#43783

Michael Visser, Alfons J. M. Stams, Manon Frutschi, Rizlan Bernier-Latmani: Phylogenetic comparison of Desulfotomaculum species of subgroup 1a and description of Desulfotomaculum reducens sp. nov.. IJSEM 66: 762 - 767 2016 ( DOI 10.1099/ijsem.0.000786 , PubMed 26597812 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90734

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400534.1 )

* These data were automatically processed and therefore are not curated

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Desulforamulus reducens MI-1 MI-1

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