Name: Nonomuraea indica DRQ-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132338

Type strain:

Species: Nonomuraea indica

Strain Designation: DRQ-2

Culture col. no.: DSM 103467, CCTCC AA 209050, NCIM 5480, JCM 31750

Strain history: CCTCC AA 209050 <-- S. G. Dastager; NCIM Resour. Center, India; DRQ-2.

NCBI tax ID(s): 1581193 (species)

Section

Nonomuraea indica DRQ-2 is a spore-forming, mesophilic bacterium that was isolated from soils of limestone open pit mine.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea indica**
	Full Scientific Name (LPSN)	Nonomuraea indica Quadri et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.857

Multimedia content

[Ref.: #24127]

Caption:

Medium 554 28°C

[Ref.: #24127]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-7, MK-9(H₂), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24127]	Sample type/isolated from	soils of limestone open pit mine
[Ref.: #24127]	Geographic location (country and/or sea, region)	Gulbarga region, Karnataka
[Ref.: #24127]	Country	India
[Ref.: #24127]	Country ISO 3 Code	IND
[Ref.: #24127]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Lime-stone open pit of the Gulbarga region of Karnataka Province
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24127]	Nonomuraea indica strain DRQ-2 16S ribosomal RNA gene, partial sequence	KM522835	1423	ENA	1581193 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nonomuraea indica DRQ-2	GCA_002850745	scaffold	GenBank	1581193 tax ID
[Ref.: #66792]	Nonomuraea indica DRQ-2	2791355012	draft	JGI IMG/M	1581193 tax ID	*

[Ref.: #24127]	GC-content	72.5 mol%
[Ref.: #67770]	GC-content	72.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonomuraea indica DRQ-2 NCBI: GCA_002850745.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #24127]

Culture collection no.

DSM 103467, CCTCC AA 209050, NCIM 5480, JCM 31750

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence and comparative analysis of DRQ-2, the type strain of Nonomuraea indica.	Narsing Rao MP, Dong ZY, Jiao JY, Zhou Y, Zhao J, Xiao M, Li WJ	Genomics	10.1016/j.ygeno.2020.03.023	2020	*
Phylogeny	Nonomuraea lactucae sp. nov., a novel actinomycete isolated from rhizosphere soil of lettuce (Lactuca sativa).	Cao P, Wang Y, Sun P, Li C, Zhao J, Jiang S, Zhang Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003113	2018	*
Phylogeny	Nonomuraea indica sp. nov., novel actinomycetes isolated from lime-stone open pit mine, India.	Quadri SR, Tian XP, Zhang J, Li J, Nie GX, Tang SK, Al Ruwaili J, Agsar D, Li WJ, Dastager SG	J Antibiot (Tokyo)	10.1038/ja.2015.24	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24127

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103467

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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