Bacillus oleivorans (DSM 102971, CCTCC AB 2013353, LMG 28084)

Name: Bacillus oleivorans (DSM 102971, CCTCC AB 2013353, LMG 28084)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132201

Type strain

Strain Designation JC228

Culture col. no. DSM 102971 CCTCC AB 2013353 LMG 28084 JC228

NCBI tax ID(s) 1448271

Special Collections DSMZ

History DSMZ <- BCCM/LMG, University of Gent, Belgium; LMG 28084; <- C. Sasikala, Jawaharlal Nehru Technical University, India; JC228

Links

Bacillus oleivorans JC228 is a bacterium that was isolated from contaminated laboratory Petri dish.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 391498

LMG 28084

@ref 20215

Last LPSN update 2026-05-29 08:37:48

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus oleivorans

Full scientific name Bacillus oleivorans Azmatunnisa et al. 2015

BacDive ID	Other strains from **Bacillus oleivorans** (1)	Type strain
157058	B. oleivorans CCUG 69248

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91.846

Spore formation

@ref	Spore formation	Confidence
125438		93.222

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ceramide biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	starch degradation	100	10 of 10
66794	vitamin K metabolism	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	lipoate biosynthesis	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	kanosamine biosynthesis II	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	acetate fermentation	100	4 of 4
66794	pentose phosphate pathway	100	11 of 11
66794	suberin monomers biosynthesis	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	propanol degradation	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	pyrimidine metabolism	82.22	37 of 45
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	methionine metabolism	76.92	20 of 26
66794	glycolysis	76.47	13 of 17
66794	purine metabolism	75.53	71 of 94
66794	ketogluconate metabolism	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	histidine metabolism	68.97	20 of 29
66794	alanine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	tryptophan metabolism	68.42	26 of 38
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	lipid metabolism	64.52	20 of 31
66794	heme metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	lysine metabolism	61.9	26 of 42
66794	oxidative phosphorylation	61.54	56 of 91
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	3-chlorocatechol degradation	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of pentoses	57.14	16 of 28
66794	degradation of sugar acids	56	14 of 25
66794	cysteine metabolism	55.56	10 of 18
66794	phenol degradation	55	11 of 20
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	urea cycle	53.85	7 of 13
66794	ascorbate metabolism	50	11 of 22
66794	lactate fermentation	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	sphingosine metabolism	50	3 of 6
66794	glutathione metabolism	50	7 of 14
66794	biotin biosynthesis	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	polyamine pathway	47.83	11 of 23
66794	vitamin B6 metabolism	45.45	5 of 11
66794	allantoin degradation	44.44	4 of 9
66794	4-hydroxymandelate degradation	44.44	4 of 9
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	bacilysin biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	metabolism of disaccharids	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	IAA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	cholesterol biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	ginsenoside metabolism	25	4 of 16
66794	vitamin E metabolism	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Engineered	#Laboratory

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
23990	contaminated laboratory Petri dish	Hyderabad	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence HG799486 (>99% sequence identity) for Bacillus oleivorans from Microbeatlas

Aquatic Samples	4
Soil Samples	4
Animal Samples	1
Plant Samples	0
Total Samples	9

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2740891863 annotated assembly for Bacillus oleivorans JC228	scaffold	GCA_900207585	1448271.3	2740891863	1448271	71.98
124043	ASM4054583v1 assembly for Bacillus oleivorans DSM 102971	contig	GCA_040545835		2928582855	1448271	70.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23990	Bacillus oleivorans partial 16S rRNA gene, type strain JC228T	HG799486	1400		1448271

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2740891863 annotated assembly for Bacillus oleivorans JC228
NCBI: GCA_900207585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.85	no
125439	gram_stain	BacteriaNetⓘ	variable	67.04	no
125439	motility	BacteriaNetⓘ	yes	70.61	no
125439	spore_formation	BacteriaNetⓘ	yes	85.41	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus oleivorans JC228
NCBI: GCA_900207585.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.70	no
125438	anaerobic	anaerobicⓘ	no	97.95	no
125438	aerobic	aerobicⓘ	yes	74.41	no
125438	spore-forming	spore-formingⓘ	yes	93.22	no
125438	thermophilic	thermophileⓘ	no	92.61	no
125438	flagellated	motile2+ⓘ	yes	82.52	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bacillus litorisediminis sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment.	Tang R, Yang S, Han S, Xie CJ, Huang GM, Narsing Rao MP, Liu GH, Zhou SG.	Curr Microbiol	10.1007/s00284-023-03180-9	2023
Phylogeny	Bacillus oleivorans sp. nov., a diesel oil-degrading and solvent-tolerant bacterium.	Azmatunnisa M, Rahul K, Subhash Y, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.000103	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23990	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102971
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus oleivorans (DSM 102971, CCTCC AB 2013353, LMG 28084)

Name and taxonomic classification

Morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900207585

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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