Vibrio cortegadensis (DSM 102805, CECT 7227, LMG 27474)

Name: Vibrio cortegadensis (DSM 102805, CECT 7227, LMG 27474)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132167

Type strain

Strain Designation C 16.17

Culture col. no. DSM 102805 CECT 7227 LMG 27474 C 16.17 CIP 110813 1 more

NCBI tax ID(s) 1328770

Special Collections DSMZ CIP

History <- CECT <- A. Lasa, Centro de Investigaciones Biológicas, Universidad de Santiago de Compostela, Spain <- R. Beaz CIP <- 2014, CECT <- 2006, JL Romalde, Santiago de Compostela Univ., Santiago de Compostela, Spain: strain C 16.17

Links

Vibrio cortegadensis C 16.17 is a Gram-negative, motile, rod-shaped bacterium that was isolated from healthy Manila clam .

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376929

CECT 7227,LMG 27474,LMG 27475,CECT 8125,DSM 102805,CIP 110813

@ref 20215

Last LPSN update 2026-02-09 11:31:38

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio cortegadensis

Full scientific name Vibrio cortegadensis Lasa et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			99.917
118758	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41595	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
23956	HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)	Medium recipe at MediaDive	Name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water
118758	CIP Medium 13	Medium recipe at CIP
118758	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
23956	positive	growth	25
41595	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.734

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	-	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
23956	-	+	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
23956	healthy Manila clam ( Venerupis philippinarum)	Venerupis philippinarum	Cortegada Island, Carril, Galicia	Spain	ESP	Europe
118758	Healthy culture Manila clam, Ruditapes Philippinarum		Carril (A Coruna), Spain	Spain	ESP	Europe	2005-01-03

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23956	1	Risk group (German classification)
118758	2	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2434739v1 assembly for Vibrio cortegadensis CECT 7227	complete	GCA_024347395	1328770.12	8113025848	1328770	98.47
124043	ASM3041001v1 assembly for Vibrio cortegadensis CECT 7227	scaffold	GCA_030410015	1328770.14	8111805781	1328770	60.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23956	Vibrio cortegadensis partial 16S rRNA gene, strain CECT 7227	HF955037	1417		1328770
124043	Vibrio cortegadensis strain CECT 7227 16S ribosomal RNA gene, partial sequence.	MT760267	1361		1328770

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio cortegadensis CECT 7227
NCBI: GCA_024347395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.92	no
125438	anaerobic	anaerobicⓘ	no	95.37	no
125438	aerobic	aerobicⓘ	no	68.24	no
125438	spore-forming	spore-formingⓘ	no	90.73	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	87.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio cortegadensis sp. nov., isolated from clams.	Lasa A, Dieguez AL, Romalde JL	Antonie Van Leeuwenhoek	10.1007/s10482-013-0078-z	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23956	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102805
#41595	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#118758	Collection of Institut Pasteur ; Curators of the CIP; CIP 110813
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio cortegadensis (DSM 102805, CECT 7227, LMG 27474)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024347395

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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