Name: Phenylobacterium sp. Root1277
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132088

Type strain:

Species: Phenylobacterium sp.

Strain Designation: Root1277

Culture col. no.: DSM 102494

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root1277 <- Y. Bai

NCBI tax ID(s): 1871053 (species)

SI-ID 407425

DSM 102494

Other strains from Phenylobacterium sp.

P. sp. JPR39, DSM 22822
P. sp. Root77, DSM 102497
P. sp. Root700, DSM 102496
P. sp. Root1290, DSM 102495

Section

Phenylobacterium sp. Root1277 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Caulobacteraceae*
	Genus	*Phenylobacterium*
	Full Scientific Name (LPSN)	Phenylobacterium Lingens et al. 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23878]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #23878]

Culture medium growth

[Ref.: #23878]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23878]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23878]			growth	28 °C

[Ref.: #23878]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23878]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Shakdara (Sha)
[Ref.: #23878]	Host species	Arabidopsis thaliana
[Ref.: #23878]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #23878]	Country	Germany
[Ref.: #23878]	Country ISO 3 Code	DEU
[Ref.: #23878]	Continent	Europe
[Ref.: #23878]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23878]	Phenylobacterium sp. Root1277, whole genome shotgun sequencing project	LMDZ00000000	11	ENA	1736442 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phenylobacterium sp. Root1277	GCA_001425915	contig	GenBank	1736442 tax ID	*
[Ref.: #66792]	Phenylobacterium sp. Root1277	1736442.3	wgs	PATRIC	1736442 tax ID	*
[Ref.: #66792]	Phenylobacterium sp. Root1277	2643221661	draft	JGI IMG/M	1736442 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phenylobacterium sp. Root1277 PATRIC: 1736442.3
[Ref.: #69480]	motile	yes	84.134	no
[Ref.: #69480]	gram-positive	no	98.092	no
[Ref.: #69480]	anaerobic	no	98.064	no
[Ref.: #69480]	aerobic	yes	92.538	no
[Ref.: #69480]	halophile	no	94.855	no
[Ref.: #69480]	spore-forming	no	95.696	no
[Ref.: #69480]	glucose-util	yes	75.608	no
[Ref.: #69480]	flagellated	no	81.158	no
[Ref.: #69480]	thermophile	no	98.807	no
[Ref.: #69480]	glucose-ferment	no	93.621	no

Availability in culture collections External links

[Ref.: #23878]

Culture collection no.

DSM 102494

[Ref.: #90444]

SI-ID 407425

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23878

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102494

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90444

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407425.1 )

* These data were automatically processed and therefore are not curated

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