Simiduia curdlanivorans (DSM 103066, CECT 8570, DMCK3-4)

Name: Simiduia curdlanivorans (DSM 103066, CECT 8570, DMCK3-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131915

Type strain

Strain Designation DMCK3-4

Culture col. no. DSM 103066 CECT 8570 DMCK3-4 KCTC 42075

NCBI tax ID(s) 1492769

Special Collections DSMZ KCTC

Links

Simiduia curdlanivorans DMCK3-4 is a mesophilic prokaryote that was isolated from water from the junction between ocean and fresh water spring.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398864

KCTC 42075,CECT 8570,DSM 103066

@ref 20215

Last LPSN update 2025-12-16 10:01:22

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Cellvibrionaceae

Genus Simiduia

Species Simiduia curdlanivorans

Full scientific name Simiduia curdlanivorans Park et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23707	REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23707	positive	growth	28	mesophilic

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
23707	+	-	-	-	-	+	+	+	+	-	-	-	+	+	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Spring

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
23707	water from the junction between ocean and fresh water spring	Jeju Island	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KJ569530 (>99% sequence identity) for Simiduia from Microbeatlas

Aquatic Samples	1602
Soil Samples	40
Animal Samples	45
Plant Samples	6
Total Samples	1693

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23707	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3040960v1 assembly for Simiduia curdlanivorans CECT 8570	contig	GCA_030409605	1492769.4	8046532973	1492769	74.31
124043	ASM4265116v1 assembly for Simiduia curdlanivorans CECT 8570	scaffold	GCA_042651165			1492769	72.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23707	Simiduia curdlanivorans strain DMCK3-4 16S ribosomal RNA gene, partial sequence	KJ569530	1463		1492769
124043	Simiduia curdlanivorans strain CECT 8570 16S ribosomal RNA gene, partial sequence.	MT760303	1322		1492769

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Simiduia curdlanivorans sp. nov., a curdlan-degrading bacterium isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Simiduia.	Park S, Kim SI, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.065334-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23707	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103066
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Simiduia curdlanivorans (DSM 103066, CECT 8570, DMCK3-4)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030409605

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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