Name: Microbacterium gorillae G3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131791

Type strain:

Species: Microbacterium gorillae

Strain Designation: G3

Culture col. no.: DSM 26203, CSUR P207

Strain history: <- F. Bittar, URMITE, UMR IRD 198, Univ. Méditerranée, Marseille, France; G3 <- M.B. Keita

NCBI tax ID(s): 1231063 (species)

Section

Microbacterium gorillae G3 is a mesophilic, Gram-positive bacterium that was isolated from gorilla stool sample.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	"Microbacterium gorillae"
	Full Scientific Name (LPSN)	Microbacterium gorillae Hadjadj et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23586]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23586]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #23586]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23586]			growth	28 °C

[Ref.: #23586]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.769

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23586]	Sample type/isolated from	gorilla stool sample
[Ref.: #23586]	Country	Cameroon
[Ref.: #23586]	Country ISO 3 Code	CMR
[Ref.: #23586]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX650056 (>99% sequence identity) for Microbacterium gorillae subclade from Microbeatlas

Aquatic Samples	73
Soil Samples	23
Animal Samples	60
Plant Samples	5
Total Samples	161

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23586]	Microbacterium gorillae strain G3 16S ribosomal RNA gene, partial sequence	JX650056	1487	ENA	1231063 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium gorillae G3	GCA_000826185	scaffold	GenBank	1231063 tax ID	*
[Ref.: #66792]	Microbacterium gorillae G3	2636415545	draft	JGI IMG/M	1231063 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium gorillae G3 NCBI: GCA_000826185.2
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium gorillae G3 NCBI: GCA_000826185.1
[Ref.: #69480]	motile	no	92.571	no
[Ref.: #69480]	flagellated	no	97.706	no
[Ref.: #69480]	gram-positive	yes	93.149	no
[Ref.: #69480]	anaerobic	no	99.32	no
[Ref.: #69480]	aerobic	yes	94.267	no
[Ref.: #69480]	halophile	no	87.209	no
[Ref.: #69480]	spore-forming	no	85.267	no
[Ref.: #69480]	glucose-util	yes	77.515	no
[Ref.: #69480]	thermophile	no	98.994	yes
[Ref.: #69480]	glucose-ferment	no	92.176	no
[Ref.: #69480]	motile	no	92.571	no
[Ref.: #69480]	flagellated	no	97.706	no
[Ref.: #69480]	gram-positive	yes	93.149	no
[Ref.: #69480]	anaerobic	no	99.32	no
[Ref.: #69480]	aerobic	yes	94.267	no
[Ref.: #69480]	halophile	no	87.209	no
[Ref.: #69480]	spore-forming	no	85.267	no
[Ref.: #69480]	glucose-util	yes	77.515	no
[Ref.: #69480]	thermophile	no	98.994	yes
[Ref.: #69480]	glucose-ferment	no	92.176	no

Availability in culture collections External links

[Ref.: #23586]

Culture collection no.

DSM 26203, CSUR P207

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non contiguous-finished genome sequence and description of Microbacterium gorillae sp. nov.	Hadjadj L, Rathored J, Keita MB, Michelle C, Levasseur A, Raoult D, Fournier PE, Rolain JM, Bittar F	Stand Genomic Sci	10.1186/s40793-016-0152-z	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23586

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26203

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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