Name: Halopiger djelfimassiliensis IIH2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131567

Type strain:

Species: Halopiger djelfimassiliensis

Strain Designation: IIH2

Culture col. no.: DSM 27506, CSUR P3035

Strain history: <- Ch. Desnues, URMITE, Univ. Méditerranée, Marseille, France <- H. I. Imene, Bab Ezouar Univ. Algier/Unité des Rickettsies, Marseille, France

NCBI tax ID(s): 1293047 (species)

SI-ID 406488

DSM 27506

Special Collections

DSMZ

Section

Halopiger djelfimassiliensis IIH2 is a Gram-negative archaeon that was isolated from evaporitic sediment of a hypersaline lake.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Natrialbales*
	Family	*Natrialbaceae*
	Genus	*Halopiger*
	Species	**Halopiger djelfimassiliensis**
	Full Scientific Name (LPSN)	Halopiger djelfimassiliensis corrig. Hassani et al. 2016

Synonym

Halopiger djelfamassiliensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22794]

Culture medium

HALOPIGER MEDIUM (SG) (DSMZ Medium 1520)

[Ref.: #22794]

Culture medium growth

[Ref.: #22794]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22794]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22794]			growth	40 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22794]	Sample type/isolated from	evaporitic sediment of a hypersaline lake
[Ref.: #22794]	Geographic location (country and/or sea, region)	Djelfa region, Lake Zahrez Gharbi
[Ref.: #22794]	Country	Algeria
[Ref.: #22794]	Country ISO 3 Code	DZA
[Ref.: #22794]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22794]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22794]	Halopiger djelfimassiliensis 16S ribosomal RNA gene, partial sequence	KC430939	1446	GenBank ENA	1293047 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halopiger djelfimassiliensis IIH2	GCA_000455365	scaffold	GenBank ENA	1293047 tax ID	*

[Ref.: #22794]

GC-content

64.30 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halopiger djelfimassiliensis IIH2 NCBI: GCA_000455365.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halopiger djelfimassiliensis IIH2 NCBI: GCA_000455365.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	78.194	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.299	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.368	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.256	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	79.736	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #22794]

Culture collection no.

DSM 27506, CSUR P3035

[Ref.: #89978]

SI-ID 406488

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22794

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27506

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89978

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406488.1 )

* These data were automatically processed and therefore are not curated

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