Paenibacillus physcomitrellae (DSM 29851, CGMCC 1.15044, XB)

Name: Paenibacillus physcomitrellae (DSM 29851, CGMCC 1.15044, XB)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131473

Type strain

Strain Designation XB

Culture col. no. DSM 29851 CGMCC 1.15044 XB

NCBI tax ID(s) 1619311

Special Collections DSMZ

History <- Y. H. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; XB

Links

Paenibacillus physcomitrellae XB is a bacterium that was isolated from moss Physcomitrella patens.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401272

DSM 29851

@ref 20215

Last LPSN update 2026-02-09 11:31:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus physcomitrellae

Full scientific name Paenibacillus physcomitrellae Zhou et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence
125439		92

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22700	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
22700	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22700	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	92.6

Spore formation

@ref	Spore formation	Confidence
125439		97.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Moss

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22700	moss Physcomitrella patens	Physcomitrella patens	Beijing	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22700	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM224022v1 assembly for Paenibacillus physcomitrellae XB	chromosome	GCA_002240225	1619311.3	2765235940	1619311	88.83
66792	ASM1464057v1 assembly for Paenibacillus physcomitrellae CGMCC 1.15044	contig	GCA_014640575	1619311.4	8113127525	1619311	63.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22700	Paenibacillus physcomitrellae strain XB 16S ribosomal RNA gene, partial sequence	KP334123	1519		1619311

GC content

@ref	GC-content (mol%)	Method
22700	53.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus physcomitrellae XB
IMG: 2765235940

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.20	no
125439	motility	BacteriaNetⓘ	yes	92.00	no
125439	gram_stain	BacteriaNetⓘ	variable	84.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Occurrence of vanHAX and Related Genes beyond the Actinobacteria Phylum.	Yushchuk O, Binda E, Fedorenko V, Marinelli F.	Genes (Basel)	10.3390/genes13111960	2022
Phylogeny	Paenibacillus mobilis sp. nov., a Gram-stain-negative bacterium isolated from soil.	Yang D, Cha S, Choi J, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002643	2018
Phylogeny	Paenibacillus physcomitrellae sp. nov., isolated from the moss Physcomitrella patens.	Zhou X, Nan Guo G, Qi Wang L, Lan Bai S, Li Li C, Yu R, Hong Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000428	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29851
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus physcomitrellae (DSM 29851, CGMCC 1.15044, XB)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002240225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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