Name: Paracoccus sanguinis 05503
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131348

Type strain:

Species: Paracoccus sanguinis

Strain Designation: 05503

Culture col. no.: DSM 29303, LMG 28451

Strain history: <- W. J. Wolfgang, Wadsworth Center, NYS Dept. of Health, Albany, USA; 05503

NCBI tax ID(s): 1545044 (species)

SI-ID 403036

DSM 29303

Section

Paracoccus sanguinis 05503 is a mesophilic bacterium that was isolated from blood from human patient.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus sanguinis**
	Full Scientific Name (LPSN)	Paracoccus sanguinis McGinnis et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22575]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22575]

Culture medium growth

[Ref.: #22575]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22575]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22575]			growth	37 °C

[Ref.: #22575]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22575]	25346	not determinedn.d.	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22575]	Sample type/isolated from	blood from human patient
[Ref.: #22575]	Geographic location (country and/or sea, region)	New York, Steuben County
[Ref.: #22575]	Country	USA
[Ref.: #22575]	Country ISO 3 Code	USA
[Ref.: #22575]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ960184 (>99% sequence identity) for Paracoccus sanguinis from Microbeatlas

Aquatic Samples	1572
Soil Samples	775
Animal Samples	3929
Plant Samples	129
Total Samples	6405

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22575]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22575]	Paracoccus sanguinis strain 05503 16S ribosomal RNA gene, partial sequence	KJ960184	1385	ENA	1545044 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus sanguinis DSM 29303	GCA_900106665	contig	GenBank	1545044 tax ID	*
[Ref.: #66792]	Paracoccus sanguinis strain DSM 29303	1545044.3	wgs	PATRIC	1545044 tax ID	*
[Ref.: #66792]	Paracoccus sanguinis DSM 29303	2693429863	draft	JGI IMG/M	1545044 tax ID	*

[Ref.: #22575]

GC-content

70 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus sanguinis strain DSM 29303 PATRIC: 1545044.3
[Ref.: #69480]	motile	no	60.095	no
[Ref.: #69480]	gram-positive	no	98.195	no
[Ref.: #69480]	anaerobic	no	99.19	no
[Ref.: #69480]	aerobic	yes	95.83	no
[Ref.: #69480]	halophile	no	73.89	no
[Ref.: #69480]	spore-forming	no	96.809	no
[Ref.: #69480]	thermophile	no	88.093	yes
[Ref.: #69480]	glucose-util	yes	76.809	yes
[Ref.: #69480]	flagellated	no	86.335	no
[Ref.: #69480]	glucose-ferment	no	90.788	no

Availability in culture collections External links

[Ref.: #22575]

Culture collection no.

DSM 29303, LMG 28451

[Ref.: #89789]

SI-ID 403036

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus sanguinis sp. nov., isolated from clinical specimens of New York State patients.	McGinnis JM, Cole JA, Dickinson MC, Mingle LA, Lapierre P, Musser KA, Wolfgang WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000193	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22575

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29303

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89789

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403036.1 )

* These data were automatically processed and therefore are not curated

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Paracoccus sanguinis strain DSM 29303

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