Name: Chryseobacterium polytrichastri YG4-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131332

Type strain:

Species: Chryseobacterium polytrichastri

Strain Designation: YG4-6

Culture col. no.: DSM 26899, CGMCC 1.12491

Strain history: <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing , PR China; YG4-6 <- X. Chen and R. Zhao

NCBI tax ID(s): 1302687 (species)

SI-ID 400357

DSM 26899

Section

Chryseobacterium polytrichastri YG4-6 is a mesophilic, Gram-negative bacterium that was isolated from surface-disinfected moss .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium polytrichastri**
	Full Scientific Name (LPSN)	Chryseobacterium polytrichastri Chen et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22559]

Culture medium

TGY MEDIUM (DSMZ Medium 1496)

[Ref.: #22559]

Culture medium growth

[Ref.: #22559]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22559]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22559]			growth	28 °C

[Ref.: #22559]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22559]	Sample type/isolated from	surface-disinfected moss (Polytrichastrum formosum)
[Ref.: #22559]	Host species	Polytrichastrum formosum
[Ref.: #22559]	Geographic location (country and/or sea, region)	Tibet province, Gawalong glacier zone (29° 38' 58.66'' N, 91° 06' 56.34'' E)
[Ref.: #22559]	Country	China
[Ref.: #22559]	Country ISO 3 Code	CHN
[Ref.: #22559]	Continent	Asia
[Ref.: #22559]	Geographic location	29.6496°/91.1156°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Moss
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC560018 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	503
Soil Samples	509
Animal Samples	526
Plant Samples	304
Total Samples	1842

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22559]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22559]	Chryseobacterium polytrichastri strain YG4-6 16S ribosomal RNA gene, partial sequence	KC560018	1478	ENA	1302687 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium polytrichastri DSM 26899	GCA_900142445	scaffold	GenBank	1302687 tax ID	*
[Ref.: #66792]	Chryseobacterium polytrichastri strain DSM 26899	1302687.4	wgs	PATRIC	1302687 tax ID	*
[Ref.: #66792]	Chryseobacterium polytrichastri DSM 26899	2700988715	draft	JGI IMG/M	1302687 tax ID	*

[Ref.: #22559]

GC-content

37.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium polytrichastri DSM 26899 NCBI: GCA_900142445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium polytrichastri DSM 26899 NCBI: GCA_900142445.1
[Ref.: #69480]	motile	no	89.503	no
[Ref.: #69480]	flagellated	no	95.522	no
[Ref.: #69480]	gram-positive	no	98.04	no
[Ref.: #69480]	anaerobic	no	99.462	no
[Ref.: #69480]	aerobic	yes	93.877	no
[Ref.: #69480]	halophile	no	95.479	no
[Ref.: #69480]	spore-forming	no	93.3	no
[Ref.: #69480]	thermophile	no	99.684	yes
[Ref.: #69480]	glucose-util	yes	89.091	no
[Ref.: #69480]	glucose-ferment	no	88.68	no

Availability in culture collections External links

[Ref.: #22559]

Culture collection no.

DSM 26899, CGMCC 1.12491

[Ref.: #89773]

SI-ID 400357

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium panacis sp. nov., isolated from ginseng soil.	Singh P, Kim YJ, Farh Mel-A, Dan WD, Kang CH, Yang DC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0620-2	2015	*
Phylogeny	Chryseobacterium limigenitum sp. nov., isolated from dehydrated sludge.	Kampfer P, Trcek J, Skok B, Sorgo A, Glaeser SP	Antonie Van Leeuwenhoek	10.1007/s10482-015-0434-2	2015	*
Phylogeny	Chryseobacterium polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Chryseobacterium.	Chen XY, Zhao R, Chen ZL, Liu L, Li XD, Li YH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0338-6	2014	*
Phylogeny	Chryseobacterium glaciei sp. nov., isolated from the surface of a glacier in the Indian trans-Himalayas.	Pal M, Kumari M, Kiran S, Salwan R, Mayilraj S, Chhibber S, Gulati A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002600	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22559

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26899

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89773

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400357.1 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium polytrichastri DSM 26899

Chryseobacterium polytrichastri DSM 26899

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