Natronoarchaeum philippinense (DSM 27208, CECT 7630, JCM 16593)

Name: Natronoarchaeum philippinense (DSM 27208, CECT 7630, JCM 16593)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131258

Type strain

Strain Designation 294-194-5

Culture col. no. DSM 27208 CECT 7630 JCM 16593 294-194-5

NCBI tax ID(s) 558529

Special Collections DSMZ JCM Literature strains

History <- JCM <- S. Nagaoka, Toyo Univ., Kawago, Saitama, Japan; 294-194-5 S. Nagaoka 294-194-5.

Links

Natronoarchaeum philippinense 294-194-5 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from commercial solar salt imported from the Philippines.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 387508

CECT 7630,JCM 16593,DSM 27208

@ref 20215

Last LPSN update 2026-02-09 11:31:25

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natronoarchaeaceae

Genus Natronoarchaeum

Species Natronoarchaeum philippinense

Full scientific name Natronoarchaeum philippinense Shimane et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Motility
30704	negative	2.25 µm	0.7 µm

Pigmentation

30704

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22485	HALORHABDUS UTAHENSIS MEDIUM (DSMZ Medium 927)		Medium recipe at MediaDive	Name: HALORHABDUS UTAHENSIS MEDIUM (DSMZ Medium 927; with strain-specific modifications) Composition: NaCl 270.0 g/l MgSO4 x 7 H2O 20.0 g/l Tris-HCl 12.0 g/l KCl 5.0 g/l NH4Cl 2.0 g/l Glucose 2.0 g/l Yeast extract 1.0 g/l KH2PO4 0.125 g/l NaBr 0.1 g/l CaCl2 x 6 H2O 0.05 g/l FeCl2 x 4 H2O 0.005 g/l HCl 0.00325 g/l FeCl2 x 7 H2O 0.003 g/l CoCl2 x 6 H2O 0.00038 g/l MnCl2 x 4 H2O 0.0002 g/l ZnCl2 0.00014 g/l H3BO3 0.000124 g/l Na2MoO4 x 2 H2O 7.2e-05 g/l NiCl2 x 6 H2O 4.8e-05 g/l CuCl2 x 2 H2O 3.4e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22485	positive	growth	37	mesophilic
30704	positive	growth	20-50
30704	positive	optimum	41	thermophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30704	positive	optimum	8
30704	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30704	aerobe
125439	aerobe	95.3

Spore formation

@ref	Spore formation	Confidence
125439		93.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30704	NaCl	positive	growth	14-30 %
30704	NaCl	positive	optimum	18 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30704	22599 ChEBI	arabinose	+	carbon source
30704	28757 ChEBI	fructose	+	carbon source
30704	28260 ChEBI	galactose	+	carbon source
30704	17234 ChEBI	glucose	+	carbon source
30704	17754 ChEBI	glycerol	+	carbon source
30704	37684 ChEBI	mannose	+	carbon source
30704	15361 ChEBI	pyruvate	+	carbon source
30704	33942 ChEBI	ribose	+	carbon source
30704	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30704	catalase	+	1.11.1.6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	denitrification	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	ceramide biosynthesis	100	1 of 1
66794	flavin biosynthesis	93.33	14 of 15
66794	starch degradation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	biotin biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	ketogluconate metabolism	75	6 of 8
66794	proline metabolism	72.73	8 of 11
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	photosynthesis	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	threonine metabolism	70	7 of 10
66794	purine metabolism	68.09	64 of 94
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	pantothenate biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	pyrimidine metabolism	66.67	30 of 45
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	heme metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	leucine metabolism	61.54	8 of 13
66794	propionate fermentation	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	arginine metabolism	58.33	14 of 24
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	tyrosine metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	oxidative phosphorylation	57.14	52 of 91
66794	alanine metabolism	55.17	16 of 29
66794	lysine metabolism	54.76	23 of 42
66794	carotenoid biosynthesis	54.55	12 of 22
66794	d-xylose degradation	54.55	6 of 11
66794	pentose phosphate pathway	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	tryptophan metabolism	52.63	20 of 38
66794	kanosamine biosynthesis II	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	degradation of sugar alcohols	50	8 of 16
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	methionine metabolism	50	13 of 26
66794	phenylmercury acetate degradation	50	1 of 2
66794	urea cycle	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	molybdenum cofactor biosynthesis	44.44	4 of 9
66794	glutathione metabolism	42.86	6 of 14
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	ascorbate metabolism	40.91	9 of 22
66794	3-phenylpropionate degradation	40	6 of 15
66794	gallate degradation	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	arachidonic acid metabolism	38.89	7 of 18
66794	cysteine metabolism	38.89	7 of 18
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	sulfate reduction	38.46	5 of 13
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	phenol degradation	35	7 of 20
66794	enterobactin biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	butanoate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	ppGpp biosynthesis	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	lipid A biosynthesis	22.22	2 of 9
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
22485	commercial solar salt imported from the Philippines	Japan	JPN	Asia
67770	Commercial solar salt imported from the Philippines

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22485	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2728369221 annotated assembly for Natronoarchaeum philippinense DSM 27208	contig	GCA_900215575	558529.3	2728369221	558529	75.29

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
22485	Natronoarchaeum philippinense gene for 16S rRNA, partial sequence	AB457580	1431	558529
22485	Natronoarchaeum philippinense rrnB operon gene for 16S rRNA, partial sequence	AB533256	1431	558529
124043	Natronoarchaeum philippinense gene for 16S ribosomal RNA, partial sequence.	AB771435	1471	558529
124043	Natronoarchaeum philippinense gene for 16S ribosomal RNA, partial sequence, strain: JCM 16593.	AB935416	1471	558529

GC content

@ref	GC-content (mol%)	Method
22485	63.0	high performance liquid chromatography (HPLC)
30704	63
67770	63	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Natronoarchaeum philippinense DSM 27208
NCBI: GCA_900215575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.50	no
125439	motility	BacteriaNetⓘ	yes	63.50	no
125439	gram_stain	BacteriaNetⓘ	negative	89.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	95.30	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronoarchaeum rubrum sp. nov., isolated from a marine solar saltern, and emended description of the genus Natronoarchaeum.	Qiu XX, Zhao ML, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.059071-0	2014
Phylogeny	Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt.	Shimane Y, Nagaoka S, Minegishi H, Kamekura M, Echigo A, Hatada Y, Ito T, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.042549-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22485	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27208
#27035	IJSEM 920 2013 ( DOI 10.1099/ijs.0.042549-0 , PubMed 22659499 )
#30704	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27035
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natronoarchaeum philippinense (DSM 27208, CECT 7630, JCM 16593)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900215575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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