Name: Pseudomonas cedrina DSM 17516
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13119

Type strain:

Species: Pseudomonas cedrina

Culture col. no.: DSM 17516, CIP 105541, CFML 96-198

Strain history: CIP <- 1998, F. Dabboussi, Fac. Med., Lille, France: strain CFML 96-198, "Pseudomonas cedrella"

NCBI tax ID(s): 651740 (species)

SI-ID 69782

CIP 105541, DSM 17516, LMG 23661

Section

Pseudomonas cedrina DSM 17516 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from spring water.

Gram-negative
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas cedrina**
	Full Scientific Name (LPSN)	Pseudomonas cedrina corrig. Dabboussi et al. 2002

Synonym

Pseudomonas cedrella

Information on morphological and physiological properties Morphology

[Ref.: #117228]	Gram stain	negative

[Ref.: #117228]	Cell shape	rod-shaped

[Ref.: #117228]	Motility	no

[Ref.: #117228]	Pigment production	no
[Ref.: #117228]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7035]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #7035]

Culture medium growth

[Ref.: #7035]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7035]

Culture medium composition

expand / minimize

[Ref.: #39310]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39310]

Culture medium growth

[Ref.: #39310]

Culture medium composition

expand / minimize

[Ref.: #117228]

Culture medium

CIP Medium 3

[Ref.: #117228]

Culture medium growth

[Ref.: #117228]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7035]		growth	30 °C
[Ref.: #39310]		growth	30 °C
[Ref.: #117228]		growth	5-37 °C
[Ref.: #117228]	no	growth	41 °C

[Ref.: #7035]	Temperature range	mesophilic
[Ref.: #39310]	Temperature range	mesophilic
[Ref.: #117228]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #117228]

Oxygen tolerance

obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #117228]	NaCl		growth	0-6	%
[Ref.: #117228]	NaCl	no	growth	8	%
[Ref.: #117228]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #117228]	citrate ChEBI	+	carbon source
[Ref.: #117228]	esculin ChEBI	+	hydrolysis
[Ref.: #117228]	nitrate ChEBI	+	reduction
[Ref.: #117228]	nitrate ChEBI	-	respiration
[Ref.: #117228]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #117228]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #117228]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #117228]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #117228]	amylase	-
[Ref.: #117228]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #117228]	caseinase	+	3.4.21.50
[Ref.: #117228]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #117228]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #117228]	gelatinase	+/-
[Ref.: #117228]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #117228]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #117228]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117228]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #117228]	oxidase	+
[Ref.: #117228]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #117228]	tryptophan deaminase	-
[Ref.: #117228]	tween esterase	-
[Ref.: #117228]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #117228]	1209	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	+	+	+	-	-	+	-	+	-	-	+	+	-	+	+	-	-	+	+	-	-	-	-	+	+	+	-	+	+	+	+	-	-	+	+	-	+	+	+	-	-	-	-	-	+	+	+	+	-	+	+	+	+	+	+	+	+	-	+	-	+	-	+	+	+	+	+	+	+	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117228]	8783	-	-	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7035]	Sample type/isolated from	spring water
[Ref.: #7035]	Country	Lebanon
[Ref.: #7035]	Country ISO 3 Code	LBN
[Ref.: #7035]	Continent	Asia

[Ref.: #117228]	Sample type/isolated from	Environment, Spring water
[Ref.: #117228]	Country	Lebanon
[Ref.: #117228]	Country ISO 3 Code	LBN
[Ref.: #117228]	Continent	Asia
[Ref.: #117228]	Isolation date	1995
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF064461 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1631
Soil Samples	874
Animal Samples	3216
Plant Samples	2451
Total Samples	8172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7035]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117228]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7035]	Pseudomonas cedrella 16S ribosomal RNA gene, complete sequence	AF064461	1516	ENA	651740 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas cedrina subsp. cedrina DSM 17516	GCA_001983175	contig	GenBank	76762 tax ID	*
[Ref.: #66792]	Pseudomonas cedrina subsp. cedrina strain DSM 17516	76762.3	wgs	PATRIC	76762 tax ID	*
[Ref.: #66792]	Pseudomonas cedrina cedrina DSM 17516	2917190755	draft	JGI IMG/M	76762 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas cedrina subsp. cedrina strain DSM 17516 PATRIC: 76762.3
[Ref.: #69480]	motile	yes	91.972	no
[Ref.: #69480]	flagellated	yes	82.508	no
[Ref.: #69480]	gram-positive	no	98.234	no
[Ref.: #69480]	anaerobic	no	98.408	no
[Ref.: #69480]	halophile	no	90.881	no
[Ref.: #69480]	spore-forming	no	94.852	no
[Ref.: #69480]	glucose-util	yes	94.783	no
[Ref.: #69480]	aerobic	yes	92.613	no
[Ref.: #69480]	glucose-ferment	no	88.636	no
[Ref.: #69480]	thermophile	no	99.883	yes

Availability in culture collections External links

[Ref.: #7035]

Culture collection no.

DSM 17516, CIP 105541, CFML 96-198

[Ref.: #82327]

SI-ID 69782

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas lactucae sp. nov., a pathogen causing bacterial rot of lettuce in Japan.	Sawada H, Fujikawa T, Satou M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004917	2021	*
Phylogeny	Pseudomonas cedrina subsp. fulgida subsp. nov., a fluorescent bacterium isolated from the phyllosphere of grasses; emended description of Pseudomonas cedrina and description of Pseudomonas cedrina subsp. cedrina subsp. nov.	Behrendt U, Schumann P, Meyer JM, Ulrich A	Int J Syst Evol Microbiol	10.1099/ijs.0.005025-0	2009	*
Phylogeny	Pseudomonas grimontii sp. nov.	Baida N, Yazourh A, Singer E, Izard D	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1497	2002	*
Phylogeny	Taxonomic study of bacteria isolated from Lebanese spring waters: proposal for Pseudomonas cedrella sp. nov. and P. orientalis sp. nov.	Dabboussi F, Hamze M, Elomari M, Verhille S, Baida N, Izard D, Leclerc H	Res Microbiol	10.1016/s0923-2508(99)80056-4	1999	*

References

#7035

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17516

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39310 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82327

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID69782.1 )

#117228 Collection of Institut Pasteur ; Curators of the CIP; CIP 105541
* These data were automatically processed and therefore are not curated

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Pseudomonas cedrina subsp. cedrina strain DSM 17516

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