Name: Sphaerotilus sp. D-507
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131171

Type strain:

Species: Sphaerotilus sp.

Strain Designation: D-507

Culture col. no.: DSM 22546

Strain history: <- M. Grabovich, Voronezh State Univ., Russia; D-507 <- E. Gridneva, M. Grabovich and G. Dubinina

NCBI tax ID(s): 2093942 (species)

SI-ID 401551

DSM 22546

Section

Sphaerotilus sp. D-507 is a mesophilic bacterium that was isolated from sulfide spring.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Sphaerotilus*
	Full Scientific Name (LPSN)	Sphaerotilus Kützing 1833 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22463]

Culture medium

SPHAEROTILUS MEDIUM (DSMZ Medium 51)

[Ref.: #22463]

Culture medium growth

[Ref.: #22463]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22463]

Culture medium composition

expand / minimize

[Ref.: #22463]

Culture medium

SPHAEROTILUS NATANS SUBSPEC. SULFIDIVORANS MEDIUM (DSMZ Medium 1664)

[Ref.: #22463]

Culture medium growth

[Ref.: #22463]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22463]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22463]			growth	25 °C

[Ref.: #22463]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22463]	Sample type/isolated from	sulfide spring
[Ref.: #22463]	Geographic location (country and/or sea, region)	Northern Caucasus
[Ref.: #22463]	Country	Russia
[Ref.: #22463]	Country ISO 3 Code	RUS
[Ref.: #22463]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Spring
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ871053 (>99% sequence identity) for Sphaerotilus natans subclade from Microbeatlas

Aquatic Samples	16039
Soil Samples	1888
Animal Samples	5244
Plant Samples	1544
Total Samples	24715

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22463]	Sphaerotilus natans subsp. sulfidivorans strain D-507 16S ribosomal RNA gene, partial sequence	FJ871053	1414	ENA	639200 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerotilus natans subsp. sulfidivorans strain D-507	639200.3	complete	PATRIC	639200 tax ID	*

[Ref.: #22463]

GC-content

69.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphaerotilus natans subsp. sulfidivorans strain D-507 PATRIC: 639200.3
[Ref.: #69480]	gram-positive	no	99.126	no
[Ref.: #69480]	anaerobic	no	98.649	no
[Ref.: #69480]	halophile	no	95.777	no
[Ref.: #69480]	spore-forming	no	93.886	no
[Ref.: #69480]	glucose-util	yes	80.261	no
[Ref.: #69480]	thermophile	no	96.872	no
[Ref.: #69480]	flagellated	yes	75.787	no
[Ref.: #69480]	aerobic	yes	89.069	no
[Ref.: #69480]	motile	yes	86.305	no
[Ref.: #69480]	glucose-ferment	no	89.11	no

Availability in culture collections External links

[Ref.: #22463]

Culture collection no.

DSM 22546

[Ref.: #89616]

SI-ID 401551

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	[Structural-functional transformation of the malate dehydrogenase system of the bacterium Sphaerotilus sp. strain D-507 depending on nutritional mode].	Eprintsev AT, Falaleeva MI, Arabtseva MA, Parfenova IV	Izv Akad Nauk Ser Biol		2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22463

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22546

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89616

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401551.1 )

* These data were automatically processed and therefore are not curated

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Sphaerotilus natans subsp. sulfidivorans strain D-507

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