Name: Microbispora camponoti 2C-HV3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131070

Type strain:

Species: Microbispora camponoti

Strain Designation: 2C-HV3

Culture col. no.: DSM 100527, CGMCC 4.7281, JCM 31773

Strain history: CGMCC 4.7281 <-- C. Liu; Northeast Agric. Univ., China; 2C-HV3.

NCBI tax ID(s): 1677852 (species)

Section

Microbispora camponoti 2C-HV3 is a mesophilic bacterium that builds an aerial mycelium and was isolated from cuticle of the ant Camponotus japonicus Mayr.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora camponoti**
	Full Scientific Name (PNU)	Microbispora camponoti Han et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69245]	Colony color	Light ivory (1015)
[Ref.: #69245]	Cultivation medium used	suter with tyrosine

[Ref.: #69245]	Colony color	Olive brown (8008)
[Ref.: #69245]	Cultivation medium used	ISP 6

[Ref.: #69245]	Colony color	Oyster white (1013)
[Ref.: #69245]	Cultivation medium used	ISP 4

[Ref.: #69245]	Colony color	Pale brown (8025)
[Ref.: #69245]	Cultivation medium used	ISP 2

[Ref.: #69245]	Colony color	Sepia brown (8014)
[Ref.: #69245]	Cultivation medium used	ISP 3

[Ref.: #69245]	Colony color	Signal white (9003)
[Ref.: #69245]	Cultivation medium used	ISP 5

[Ref.: #69245]	Colony color	Signal white (9003)
[Ref.: #69245]	Cultivation medium used	ISP 7

[Ref.: #69245]	Colony color	Traffic white (9016)
[Ref.: #69245]	Cultivation medium used	suter without tyrosine

[Ref.: #69245]	Pigment production	no
[Ref.: #69245]	Pigment name	Melanin
[Ref.: #69245]	Pigment production	yes
[Ref.: #69245]	Pigmentation color	Ochre yellow (1024)
[Ref.: #69245]	Pigment name	soluble pigment

[Ref.: #69245]	Multicellular complex forming ability	yes
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Multicellular complex color	Telegrey 4 (7047)
[Ref.: #69245]	Medium Name (multicellularity)	ISP 2

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	ISP 3

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	ISP 4

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	ISP 5

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	ISP 6

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	ISP 7

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69245]	Multicellular complex forming ability	no
[Ref.: #69245]	Multicellular complex name	Aerial mycelium
[Ref.: #69245]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #22362]

Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22362]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #22362]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #22362]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #22362]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22362]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22362]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69245]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69245]	arabinose ChEBI	+	growth
[Ref.: #69245]	cellulose ChEBI	+	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69245]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69245]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69245]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69245]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69245]	raffinose ChEBI	+	growth
[Ref.: #69245]	rhamnose ChEBI	+	growth
[Ref.: #69245]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69245]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69245]	3739	-	-	-	+	-	-	+	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69245]	5923	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	+	-	+	+	-	-	-	+	+/-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22362]	Sample type/isolated from	cuticle of the ant Camponotus japonicus Mayr
[Ref.: #22362]	Host species	Camponotus japonicus
[Ref.: #22362]	Geographic location (country and/or sea, region)	Heilongjiang province, Harbin, Northeast Agriculture University
[Ref.: #22362]	Country	China
[Ref.: #22362]	Country ISO 3 Code	CHN
[Ref.: #22362]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cuticle of Camponotus japonicus Mayr from Northeast Agric. Univ.
[Ref.: #67770]	Host species	Camponotus japonicus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Harbin, Heilongjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR261651 (>99% sequence identity) for Microbispora from Microbeatlas

Aquatic Samples	9
Soil Samples	241
Animal Samples	13
Plant Samples	43
Total Samples	306

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22362]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22362]	Microbispora camponoti strain 2C-HV3 16S ribosomal RNA gene, partial sequence	KR261651	1513	ENA	1677852 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbispora camponoti 2C-HV3	GCA_014712745	contig	GenBank	1677852 tax ID	*

[Ref.: #22362]	GC-content	69.5 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	69.3-69.7 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #22362]

Culture collection no.

DSM 100527, CGMCC 4.7281, JCM 31773

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora camponoti sp. nov., a novel actinomycete isolated from the cuticle of Camponotus japonicus Mayr.	Han C, Liu C, Zhao J, Guo L, Lu C, Li J, Jia F, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0625-x	2015	*
Phylogeny	Microbispora triticiradicis sp. nov., a novel actinomycete isolated from the root of wheat (Triticum aestivum L.).	Han C, Tian Y, Zhao J, Yu Z, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003040	2018	*
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).	Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003725	2020	*
Phylogeny	Microbispora cellulosiformans sp. nov., a novel actinomycete with cellulase activity isolated from soil in the cold region.	Gong X, Xiang W, Cao X, Yu Y, Hao Y, Li L, Wang Q, Zou H, Qian C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01477-4	2020	*
Phylogeny	Microbispora clausenae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of a Thai medicinal plant, Clausena excavala Burm. f.	Kaewkla O, Koomsiri W, Thamchaipenet A, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004518	2020	*
Phylogeny	Microbispora sitophila sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Guo L, Li Z, Xu X, Pang Q, Zhao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004684	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22362

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100527

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69245

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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