Name: Propionispira arcuata WK011
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130746

Type strain:

Species: Propionispira arcuata

Strain Designation: WK011

Culture col. no.: DSM 22929, JCM 16475, KCTC 15499

Strain history: A. Ueki; Fac. of Agric., Yamagata Univ., Japan; WK011.

NCBI tax ID(s): 433321 (species)

SI-ID 405752

DSM 22929

Section

Propionispira arcuata WK011 is an anaerobe, mesophilic bacterium that was isolated from rice-straw residue from a methanogenic reactor treating waste from cattle farms.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Negativicutes*
	Order	*Selenomonadales*
	Family	*Selenomonadaceae*
	Genus	*Propionispira*
	Species	**Propionispira arcuata**
	Full Scientific Name (LPSN)	Propionispira arcuata Ueki et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #21735]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21735]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #21735]

Culture medium growth

[Ref.: #21735]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21735]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21735]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #21735]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21735]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-xylose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	raffinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68367]		indole ChEBI	no	* from API 20A

	Physiological tests	Metabolite	Indole test
[Ref.: #68367]		indole ChEBI	-	* from API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68367]	beta-glucosidase	-	3.2.1.21	* from API 20A
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68367]	urease	-	3.5.1.5	* from API 20A

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #21735]	2074	-	-	+	+/-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21735]	Sample type/isolated from	rice-straw residue from a methanogenic reactor treating waste from cattle farms
[Ref.: #21735]	Geographic location (country and/or sea, region)	Hokkaido, Betsukai-machi
[Ref.: #21735]	Country	Japan
[Ref.: #21735]	Country ISO 3 Code	JPN
[Ref.: #21735]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Methanogenic reactor treating waste from cattle farms
* marker position based on {}

Isolation sources categories

#Engineered	#Bioreactor	-
#Engineered	#Waste	-
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB298743 (>99% sequence identity) for Propionispira arcuata subclade from Microbeatlas

Aquatic Samples	3344
Soil Samples	116
Animal Samples	501
Plant Samples	76
Total Samples	4037

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21735]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21735]	Propionispira arcuata gene for 16S rRNA, partial sequence	AB298743	1429	ENA	433321 tax ID

[Ref.: #21735]

GC-content

41.7 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21735]

Culture collection no.

DSM 22929, JCM 16475, KCTC 15499

[Ref.: #89244]

SI-ID 405752

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Propionispira arcuata sp. nov., isolated from a methanogenic reactor of cattle waste, reclassification of Zymophilus raffinosivorans and Zymophilus paucivorans as Propionispira raffinosivorans comb. nov. and Propionispira paucivorans comb. nov. and emended description of the genus Propionispira.	Ueki A, Watanabe M, Ohtaki Y, Kaku N, Ueki K	Int J Syst Evol Microbiol	10.1099/ijs.0.063875-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21735

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22929

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89244

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405752.1 )

* These data were automatically processed and therefore are not curated

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