Name: Streptomyces smyrnaeus SM3501
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130722

Type strain:

Species: Streptomyces smyrnaeus

Strain Designation: SM3501

Culture col. no.: DSM 42105, KCTC 29214

Strain history: <- N. Sahin, Ondokuz Mayis University,Turkey; SM3501 <- D. Tatar

NCBI tax ID(s): 1387713 (species)

SI-ID 400770

DSM 42105

Special Collections

DSMZ
KCTC

Section

Streptomyces smyrnaeus SM3501 is a spore-forming bacterium that was isolated from saltern pond sediment.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces smyrnaeus**
	Full Scientific Name (LPSN)	Streptomyces smyrnaeus Tatar et al. 2014

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21955]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.117
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21955]	Sample type/isolated from	saltern pond sediment
[Ref.: #21955]	Geographic location (country and/or sea, region)	Izmir, Camalti Saltern
[Ref.: #21955]	Country	Turkey
[Ref.: #21955]	Country ISO 3 Code	TUR
[Ref.: #21955]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21955]	Streptomyces smyrnaeus strain SM3501 16S ribosomal RNA gene, partial sequence	KF006349	1494	GenBank ENA	1387713 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces smyrnaeus DSM 42105	GCA_017676345	contig	GenBank ENA	1387713 tax ID	*
[Ref.: #66792]	Streptomyces smyrnaeus strain DSM 42105	1387713.3	wgs	PATRIC	1387713 tax ID	*

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GC-content

69.6 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces smyrnaeus strain DSM 42105 PATRIC: 1387713.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces smyrnaeus strain DSM 42105 PATRIC: 1387713.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.91	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.407	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.117	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.884	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

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Culture collection no.

DSM 42105, KCTC 29214

[Ref.: #89228]

SI-ID 400770

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces spirodelae sp. nov., isolated from duckweed.	Saimee Y, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.005106	2021	*
Metabolism	Streptomyces oryzae sp. nov., an endophytic actinomycete isolated from stems of rice plant.	Mingma R, Duangmal K, Thamchaipenet A, Trakulnaleamsai S, Matsumoto A, Takahashi Y	J Antibiot (Tokyo)	10.1038/ja.2014.166	2015	*
Phylogeny	Streptomyces iconiensis sp. nov. and Streptomyces smyrnaeus sp. nov., two halotolerant actinomycetes isolated from a salt lake and saltern.	Tatar D, Guven K, Sproer C, Klenk HP, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.062216-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21955

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42105

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400770.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces smyrnaeus strain DSM 42105

Streptomyces smyrnaeus strain DSM 42105

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