Name: Rhizobium laguerreae FB206
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130600

Type strain:

Species: Rhizobium laguerreae

Strain Designation: FB206

Culture col. no.: DSM 29977, CECT 8280, LMG 27434

Strain history: <- CECT <- R Mhamdi <- S. Saidi, Centre of Biotechnology of Borj-Cédria; FB206

NCBI tax ID(s): 1076926 (species)

SI-ID 387428

LMG 27434, CECT 8280, DSM 29977

Special Collections

DSMZ

Section

Rhizobium laguerreae FB206 is a Gram-negative bacterium that was isolated from effective nodules of Vicia faba.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium laguerreae**
	Full Scientific Name (LPSN)	Rhizobium laguerreae Saïdi et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.833

[Ref.: #21932]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21932]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #21932]

Culture medium growth

[Ref.: #21932]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21932]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21932]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #21932]	catalase	+	1.11.1.6
[Ref.: #21932]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21932]	24088	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21932]	Sample type/isolated from	effective nodules of Vicia faba
[Ref.: #21932]	Host species	Vicia faba
[Ref.: #21932]	Geographic location (country and/or sea, region)	Tahent
[Ref.: #21932]	Country	Tunisia
[Ref.: #21932]	Country ISO 3 Code	TUN
[Ref.: #21932]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN558651 (>99% sequence identity) for Rhizobium from Microbeatlas

Aquatic Samples	531
Soil Samples	4296
Animal Samples	942
Plant Samples	1878
Total Samples	7647

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21932]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21932]	Rhizobium laguerreae strain FB206 16S ribosomal RNA gene, partial sequence	JN558651	1475	GenBank ENA	1076926 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium laguerreae FB206	GCA_002008165	contig	GenBank ENA	1076926 tax ID	*
[Ref.: #66792]	Rhizobium laguerreae CECT 8280	GCA_014192445	scaffold	GenBank ENA	1076926 tax ID	*
[Ref.: #66792]	Rhizobium laguerreae strain CECT 8280	1076926.34	wgs	PATRIC	1076926 tax ID	*
[Ref.: #66792]	Rhizobium laguerreae CECT 8280	2824455559	draft	JGI IMG/M	1076926 tax ID	*
[Ref.: #66792]	Rhizobium laguerreae FB206	2791355258	draft	JGI IMG/M	1076926 tax ID	*
[Ref.: #66792]	Rhizobium laguerreae DSM 29977	2928387578	draft	JGI IMG/M	1076926 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium laguerreae CECT 8280 NCBI: GCA_014192445.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.832	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.691	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.219	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.75	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.405	no

Availability in culture collections External links

[Ref.: #21932]

Culture collection no.

DSM 29977, CECT 8280, LMG 27434

[Ref.: #89115]

SI-ID 387428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	A new Rhizobium species isolated from the water of a crater lake, description of Rhizobium aquaticum sp. nov.	Mathe I, Toth E, Mentes A, Szabo A, Marialigeti K, Schumann P, Felfoldi T	Antonie Van Leeuwenhoek	10.1007/s10482-018-1110-0	2018	*
Phylogeny	Rhizobium laguerreae sp. nov. nodulates Vicia faba on several continents.	Saidi S, Ramirez-Bahena MH, Santillana N, Zuniga D, Alvarez-Martinez E, Peix A, Mhamdi R, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.052191-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21932

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29977

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89115

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID387428.1 )

* These data were automatically processed and therefore are not curated

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Rhizobium laguerreae CECT 8280

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