Name: Deinococcus citri DSM 24791
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130276

Type strain:

Species: Deinococcus citri

Culture col. no.: DSM 24791, KCTC 13793, NCCP 154, JCM 19024

Strain history: <- I Ahmed, NCCP, Pakistan

NCBI tax ID(s): 759814 (species)

Section

Deinococcus citri DSM 24791 is an aerobe, mesophilic, coccus-shaped bacterium that was isolated from citrus canker lesion.

coccus-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus citri**
	Full Scientific Name (LPSN)	Deinococcus citri Ahmed et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21572]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #21572]

Culture medium growth

[Ref.: #21572]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21572]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21572]	growth	28 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #21572]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]	Observation	quinones: MK-8, MK-7
[Ref.: #67771]	Observation	quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21572]	Sample type/isolated from	citrus canker lesion
[Ref.: #21572]	Geographic location (country and/or sea, region)	Islamabad, Citrus Garden of the National Agricultural Research Centre
[Ref.: #21572]	Country	Pakistan
[Ref.: #21572]	Country ISO 3 Code	PAK
[Ref.: #21572]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Citrus leaf canker lesions collected from the Citrus Garden of the National Agricultural Research Centre
[Ref.: #67770]	Geographic location (country and/or sea, region)	Islamabad
[Ref.: #67770]	Country	Pakistan
[Ref.: #67770]	Country ISO 3 Code	PAK
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From citrus leaf canker lesions
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Citrus Garden of the National Agricultural Research Centre, Islamabad
[Ref.: #67771]	Country	Pakistan
[Ref.: #67771]	Country ISO 3 Code	PAK
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Microbial	#Bacteria
#Host	#Plants	#Shrub (Scrub)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB558498 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	2149
Soil Samples	1279
Animal Samples	4196
Plant Samples	2180
Total Samples	9804

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21572]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21572]	Deinococcus citri gene for 16S rRNA, partial sequence	AB558498	1450	ENA	759814 tax ID

[Ref.: #21572]	GC-content	70.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	70.0 mol%
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21572]

Culture collection no.

DSM 24791, KCTC 13793, NCCP 154, JCM 19024

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus petrolearius sp. nov. isolated from crude oil recovery water in China.	Xi L, Qiao N, Zhang J, Li J, Liu D, You J, Liu J	Antonie Van Leeuwenhoek	10.1007/s10482-017-0957-9	2017	*
Phylogeny	Deinococcus citri sp. nov., isolated from citrus leaf canker lesions.	Ahmed I, Abbas S, Kudo T, Iqbal M, Fujiwara T, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.066555-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21572

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24791

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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