Name: Bradyrhizobium paxllaeri DSM 18454
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130222

Type strain:

Species: Bradyrhizobium paxllaeri

Culture col. no.: DSM 18454, HAMBI 2911, LMTR 21

Strain history: <- E. Martínez-Romero, Center for Genomic Sci., Natl. Autonomous Univ. of Mexico (UNAM), Cuernavaca; LMTR 21 <- E. Ormeño-Orrillo

NCBI tax ID(s): 190148 (species)

SI-ID 403379

DSM 18454

Special Collections

DSMZ

Section

Bradyrhizobium paxllaeri DSM 18454 is a bacterium that was isolated from A nitrogen fixing root nodule of Phaseolus lunatus from an agriculture field.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Species	**Bradyrhizobium paxllaeri**
	Full Scientific Name (LPSN)	Bradyrhizobium paxllaeri Durán et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21873]

Culture medium

YM MEDIUM (DSMZ Medium 1070)

[Ref.: #21873]

Culture medium growth

[Ref.: #21873]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21873]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21873]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21873]	Sample type/isolated from	A nitrogen fixing root nodule of Phaseolus lunatus from an agriculture field
[Ref.: #21873]	Host species	Phaseolus lunatus
[Ref.: #21873]	Geographic location (country and/or sea, region)	Ica, San Camilo
[Ref.: #21873]	Country	Peru
[Ref.: #21873]	Country ISO 3 Code	PER
[Ref.: #21873]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY923031 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	4833
Soil Samples	14338
Animal Samples	6732
Plant Samples	3278
Total Samples	29181

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21873]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21873]	Bradyrhizobium sp. LMTR 21 16S ribosomal RNA gene, partial sequence	AY923031	1413	GenBank ENA	190148 tax ID

[Ref.: #21873]

GC-content

62.4 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #21873]

Culture collection no.

DSM 18454, HAMBI 2911, LMTR 21

[Ref.: #88764]

SI-ID 403379

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Identification of the symbiosis island of Bradyrhizobium paxllaeri LMTR 21(T).	Ormeno-Orrillo E, Martinez-Romero E, Zuniga-Davila D	Braz J Microbiol	10.1007/s42770-019-00164-5	2019	*
Phylogeny	Bradyrhizobium namibiense sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of Lablab purpureus, hyacinth bean, in Namibia.	Gronemeyer JL, Bunger W, Reinhold-Hurek B	Int J Syst Evol Microbiol	10.1099/ijsem.0.002039	2017	*
Genetics	Draft genome sequence of Bradyrhizobium paxllaeri LMTR 21(T) isolated from Lima bean (Phaseolus lunatus) in Peru.	Ormeno-Orrillo E, Rey L, Duran D, Canchaya CA, Rogel MA, Zuniga-Davila D, Imperial J, Ruiz-Argueso T, Martinez-Romero E	Genom Data	10.1016/j.gdata.2017.06.008	2017	*
Phylogeny	Bradyrhizobium paxllaeri sp. nov. and Bradyrhizobium icense sp. nov., nitrogen-fixing rhizobial symbionts of Lima bean (Phaseolus lunatus L.) in Peru.	Duran D, Rey L, Mayo J, Zuniga-Davila D, Imperial J, Ruiz-Argueso T, Martinez-Romero E, Ormeno-Orrillo E	Int J Syst Evol Microbiol	10.1099/ijs.0.060426-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21873

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18454

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88764

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403379.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bradyrhizobium paxllaeri in external resources:
SILVA
BRENDA
PANGAEA
GBIF