Name: Rhizobacter dauci H6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12715

Type strain:

Species: Rhizobacter dauci

Strain Designation: H6

Culture col. no.: DSM 11587, ATCC 43778, ICMP 9400

Strain history: <- ATCC <- M. Goto, H6 <- H. Kuwata

NCBI tax ID(s): 431677 (species)

SI-ID 42031

ATCC 43778, ICMP 9400, DSM 11587, LMG 9036

Section

Rhizobacter dauci H6 is a mesophilic bacterium that was isolated from carrot gall .

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Rhizobacter*
	Species	**Rhizobacter dauci**
	Full Scientific Name (LPSN)	Rhizobacter dauci corrig. Goto and Kuwata 1988

Synonym

Rhizobacter daucus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4333]

Culture medium

DILUTE POTATO MEDIUM (DSMZ Medium 789)

[Ref.: #4333]

Culture medium growth

[Ref.: #4333]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4333]

Culture medium composition

expand / minimize

[Ref.: #4333]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #4333]

Culture medium growth

[Ref.: #4333]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4333]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4333]			growth	30 °C

[Ref.: #4333]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4333]	Sample type/isolated from	carrot gall (Daucus carota)
[Ref.: #4333]	Host species	Daucus carota
[Ref.: #4333]	Country	Japan
[Ref.: #4333]	Country ISO 3 Code	JPN
[Ref.: #4333]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4333]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4333]	Rhizobacter dauci gene for 16S ribosomal RNA, partial sequence	AB297965	1481	ENA	431677 tax ID

[Ref.: #4333]

GC-content

66.9-70.6 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4333]

Culture collection no.

DSM 11587, ATCC 43778, ICMP 9400

[Ref.: #81924]

SI-ID 42031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhizobacter profundi sp. nov., isolated from freshwater sediment.	Jin L, Ko SR, Ahn CY, Lee HG, Oh HM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000962	2016	*
Phylogeny	Rhizobacter bergeniae sp. nov., isolated from the root of Bergenia scopulosa.	Wei L, Si M, Long M, Zhu L, Li C, Shen X, Wang Y, Zhao L, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.070318-0	2014	*
Phylogeny	Dissection of the genus Methylibium: reclassification of Methylibium fulvum as Rhizobacter fulvus comb. nov., Methylibium aquaticum as Piscinibacter aquaticus gen. nov., comb. nov. and Methylibium subsaxonicum as Rivibacter subsaxonicus gen. nov., comb. nov. and emended descriptions of the genera Rhizobacter and Methylibium.	Stackebrandt E, Verbarg S, Fruhling A, Busse HJ, Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.008383-0	2009	*

References

#4333

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11587

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#81924

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42031.1 )

* These data were automatically processed and therefore are not curated

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