Name: Ectobacillus panaciterrae DSM 19096
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1269

Type strain:

Species: Ectobacillus panaciterrae

Culture col. no.: DSM 19096, CCUG 52470, Gsoil 1517, KCTC 13929, LMG 23408, CIP 109496

Strain history: CIP <- 2007, CCUG <- 2006, KCTC <- S.T. Lee, KAIST

NCBI tax ID(s): 1121093 (strain), 363872 (species)

SI-ID 289787

LMG 23408, CCUG 52470, KCTC 13929, DSM 19096, CIP 109496

Special Collections

Section

When using BacDive for research please cite our paper

Ectobacillus panaciterrae DSM 19096 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil, ginseng field.

rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Ectobacillus*
	Species	**Ectobacillus panaciterrae**
	Full Scientific Name (LPSN)	Ectobacillus panaciterrae (Ten et al. 2006) Gupta et al. 2020

Synonym

Bacillus panaciterrae

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #121527]	Gram stain	positive

[Ref.: #121527]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #121527]	Motility	no
[Ref.: #67771]	Motility	no

Multimedia content

[Ref.: #7887]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7887]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7887]

Culture medium growth

[Ref.: #7887]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7887]

Culture medium composition

expand / minimize

[Ref.: #37314]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37314]

Culture medium growth

[Ref.: #37314]

Culture medium composition

expand / minimize

[Ref.: #121527]

Culture medium

CIP Medium 72

[Ref.: #121527]

Culture medium growth

[Ref.: #121527]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7887]	growth	30 °C
[Ref.: #37314]	growth	30 °C
[Ref.: #67771]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #121527]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.8

[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #125439]	Ability of spore formation	yes Confidence in %92.6

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121527]	nitrate ChEBI	+	reduction
[Ref.: #121527]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121527]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121527]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #121527]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121527]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121527]	11572	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	+	-	+	+	+	-	-	-	-	+	+	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121527]	11908	-	-	+	-	-	+	-	+	-	+	+	-	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7887]	Sample type/isolated from	soil, ginseng field
[Ref.: #7887]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #7887]	Country	Republic of Korea
[Ref.: #7887]	Country ISO 3 Code	KOR
[Ref.: #7887]	Continent	Asia

[Ref.: #59560]	Sample type/isolated from	Soil,ginseng field
[Ref.: #59560]	Geographic location (country and/or sea, region)	Pocheon
[Ref.: #59560]	Country	Republic of Korea
[Ref.: #59560]	Country ISO 3 Code	KOR
[Ref.: #59560]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #121527]	Sample type/isolated from	Environment, Soil, ginseng field
[Ref.: #121527]	Geographic location (country and/or sea, region)	Pocheon
[Ref.: #121527]	Country	Republic of Korea
[Ref.: #121527]	Country ISO 3 Code	KOR
[Ref.: #121527]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB245380 (>99% sequence identity) for Bacillus panaciterrae subclade from Microbeatlas

Aquatic Samples	33
Soil Samples	275
Animal Samples	112
Plant Samples	22
Total Samples	442

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7887]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121527]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7887]	Bacillus panaciterrae gene for 16S rRNA, partial sequence, strain: Gsoil 1517	AB245380	1476	GenBank ENA	363872 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ectobacillus panaciterrae DSM 19096	GCA_000430785	scaffold	GenBank ENA	1121093 tax ID	*
[Ref.: #66792]	Bacillus panaciterrae DSM 19096	1121093.3	wgs	PATRIC	1121093 tax ID	*
[Ref.: #66792]	Bacillus panaciterrae DSM 19096	2524614636	draft	JGI IMG/M	1121093 tax ID	*

[Ref.: #7887]

GC-content

47.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ectobacillus panaciterrae DSM 19096 DSM 19096 NCBI: GCA_000430785.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	77.718	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.368	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	60.733	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	87.977	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.68	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	66.717	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ectobacillus panaciterrae DSM 19096 NCBI: GCA_000430785
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	92.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	87.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	87.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.8

Availability in culture collections External links

[Ref.: #7887]

Culture collection no.

DSM 19096, CCUG 52470, Gsoil 1517, KCTC 13929, LMG 23408, CIP 109496

[Ref.: #70925]

SI-ID 289787

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ectobacillus aegiceratis sp. nov., a novel bacterium isolated from branch of Aegiceras corniculatum.	Chen XH, Yan XR, Huang ZH, Chen MS, Tuo L	Antonie Van Leeuwenhoek	10.1007/s10482-021-01622-7	2021	*
Phylogeny	Bacillus antri sp. nov., isolated from cave soil.	Rao MPN, Dong ZY, Zhang H, Niu XK, Zhang K, Fang BZ, Xiao M, Kang YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003473	2019	*
Phylogeny	Bacillus polymachus sp. nov., with a broad range of antibacterial activity, isolated from forest topsoil samples by using a modified culture method.	Nguyen TM, Kim J	Int J Syst Evol Microbiol	10.1099/ijs.0.070326-0	2014	*
Phylogeny	Bacillus panaciterrae sp. nov., isolated from soil of a ginseng field.	Ten LN, Baek SH, Im WT, Liu QM, Aslam Z, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64403-0	2006	*

References

#7887

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19096

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37314 ; Curators of the CIP;
#59560 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52470

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70925

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289787.1 )

#121527 Collection of Institut Pasteur ; Curators of the CIP; CIP 109496

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Ectobacillus panaciterrae DSM 19096 DSM 19096

Ectobacillus panaciterrae DSM 19096

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