Name: Pseudoalteromonas haloplanktis 545
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12679

Type strain:

Species: Pseudoalteromonas haloplanktis

Strain Designation: 545

Culture col. no.: DSM 6060, ATCC 14393, NBRC 102225, JCM 20767, CIP 103197, CCUG 13451, IAM 12915, KMM 3660, LMG 2852, NCCB 71020, NCIMB 2084

Strain history: IAM 12915 <-- ATCC 14393 <-- C. ZoBell 545 ("Vibrio haloplaktis").

NCBI tax ID(s): 1117315 (strain), 228 (species)

SI-ID 863

LMG 2852, ATCC 14393, CCUG 13451, CCUG 16127, NCMB 2084, CIP 103197, IAM 12915, NCIMB 2084, LMD 71.20, CECT 4188, NCCB 71020, BCRC 15382, CCRC 15382, NBRC 102225, JCM 20767, DSM 6060

Other strains from Pseudoalteromonas haloplanktis

P. haloplanktis CIP 104258, ATCC 19855, CECT 576, ...
P. haloplanktis JCM 20768, ATCC 19648, CCUG 16121, ...
P. haloplanktis JCM 20769, ATCC 23821, IAM 12917, ...
P. haloplanktis JCM 20770, ATCC 27127, CIP 74.04, ...

Section

Pseudoalteromonas haloplanktis 545 is a psychrophilic, motile animal pathogen of the family Pseudoalteromonadaceae.

motile
animal pathogen
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas haloplanktis**
	Full Scientific Name (LPSN)	Pseudoalteromonas haloplanktis (ZoBell and Upham 1944) Gauthier et al. 1995

	Synonym	"Vibrio* haloplanktis"*
	Synonym	Alteromonas haloplanktis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.986

[Ref.: #69480]	Motility	yes Confidence in %97.647

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42020]

Culture medium

Marine agar (MA)

[Ref.: #42020]

Culture medium growth

[Ref.: #42020]

Culture medium composition

expand / minimize

[Ref.: #2423]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2423]

Culture medium growth

[Ref.: #2423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2423]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2423]	growth	26 °C
[Ref.: #42020]	growth	22 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2423]	Temperature range	mesophilic
[Ref.: #42020]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.905

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2423]	Pathogenicity (animal)	yes
[Ref.: #2423]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Alteromonas haloplanktis 16S rRNA	D11172	211	ENA	228 tax ID	*
[Ref.: #20218]	Alteromonas haloplanktis 16S rRNA	D11221	206	ENA	228 tax ID	*
[Ref.: #20218]	Alteromonas haloplanktis 16S rRNA	D11270	192	ENA	228 tax ID	*
[Ref.: #20218]	A.haloplanktis 16S rRNA sequence	X67024	1464	ENA	228 tax ID	*
[Ref.: #20218]	Pseudoalteromonas haloplanktis gene for 16S rRNA, partial sequence, strain: NBRC 102225	AB681739	1461	ENA	228 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas haloplanktis ATCC 14393	GCA_000238355	contig	GenBank	1117315 tax ID	*
[Ref.: #66792]	Pseudoalteromonas haloplanktis ATCC 14393	1117315.3	wgs	PATRIC	1117315 tax ID	*
[Ref.: #66792]	Pseudoalteromonas haloplanktis ATCC 14393	2548876785	draft	JGI IMG/M	1117315 tax ID	*
[Ref.: #66792]	Pseudoalteromonas haloplanktis CIP103197	GCA_945859885	scaffold	GenBank	228 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas haloplanktis ATCC 14393 PATRIC: 1117315.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas haloplanktis ATCC 14393 PATRIC: 1117315.3
[Ref.: #69480]	motile	yes	91.93	no
[Ref.: #69480]	flagellated	yes	89.338	no
[Ref.: #69480]	gram-positive	no	98.991	no
[Ref.: #69480]	anaerobic	no	98.015	no
[Ref.: #69480]	aerobic	yes	90.953	no
[Ref.: #69480]	halophile	no	58.683	no
[Ref.: #69480]	spore-forming	no	95.059	no
[Ref.: #69480]	glucose-util	yes	89.54	no
[Ref.: #69480]	thermophile	no	99.551	no
[Ref.: #69480]	glucose-ferment	no	71.243	no

Availability in culture collections External links

[Ref.: #2423]

Culture collection no.

DSM 6060, ATCC 14393, NBRC 102225, JCM 20767, CIP 103197, CCUG 13451, IAM 12915, KMM 3660, LMG 2852, NCCB 71020, NCIMB 2084

[Ref.: #81890]

SI-ID 863

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Cloning, Expression, and Characterization of a Novel L-Arabinose Isomerase from the Psychrotolerant Bacterium Pseudoalteromonas haloplanktis.	Xu W, Fan C, Zhang T, Jiang B, Mu W	Mol Biotechnol	10.1007/s12033-016-9969-3	2016	*
Phylogeny	Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description.	Ivanova EP, Romanenko LA, Matte MH, Matte GR, Lysenko AM, Simidu U, Kita-Tsukamoto K, Sawabe T, Vysotskii MV, Frolova GM, Mikhailov V, Christen R, Colwell RR	Int J Syst Evol Microbiol	10.1099/00207713-51-3-1071	2001	*
Phylogeny	Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.	Gauthier G, Gauthier M, Christen R	Int J Syst Bacteriol	10.1099/00207713-45-4-755	1995	*
	[Elucidation of structure of lipid A from the marine Gram-negative bacterium Pseudoalteromonas haloplanktis ATCC 14393T].	Krasikova IN, Kapustina NV, Isakov VV, Gorshkova NM, Solov'eva TF	Bioorg Khim	10.1023/b:rubi.0000037264.53294.da	2004	*

References

#2423

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6060

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42020 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81890

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID863.1 )

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas haloplanktis ATCC 14393

Pseudoalteromonas haloplanktis ATCC 14393

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