Strain identifier
BacDive ID: 12679
Type strain: 
Species: Pseudoalteromonas haloplanktis
Strain Designation: 545
Strain history: IAM 12915 <-- ATCC 14393 <-- C. ZoBell 545 ("Vibrio haloplaktis").
NCBI tax ID(s): 1117315 (strain), 228 (species)
version 8.1 (current version)
General
@ref: 2423
BacDive-ID: 12679
DSM-Number: 6060
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic, motile, animal pathogen
description: Pseudoalteromonas haloplanktis 545 is a psychrophilic, motile animal pathogen of the family Pseudoalteromonadaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 228 | species |
| 1117315 | strain |
strain history
| @ref | history |
|---|---|
| 2423 | <- ATCC <- C.E. ZoBell, 545 |
| 67770 | IAM 12915 <-- ATCC 14393 <-- C. ZoBell 545 ("Vibrio haloplaktis"). |
doi: 10.13145/bacdive12679.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Pseudoalteromonadaceae
- genus: Pseudoalteromonas
- species: Pseudoalteromonas haloplanktis
- full scientific name: Pseudoalteromonas haloplanktis (ZoBell and Upham 1944) Gauthier et al. 1995
synonyms
@ref synonym 20215 Vibrio haloplanktis 20215 Alteromonas haloplanktis
@ref: 2423
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas haloplanktis
full scientific name: Pseudoalteromonas haloplanktis (ZoBell and Upham 1944) Gauthier et al. 1995 emend. Ivanova et al. 2001
strain designation: 545
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.647 | |
| 69480 | 99.986 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 42020 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
| 2423 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | https://mediadive.dsmz.de/medium/514 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42020 | positive | growth | 22 | psychrophilic |
| 2423 | positive | growth | 26 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.905 |
Safety information
risk assessment
- @ref: 2423
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Alteromonas haloplanktis 16S rRNA | D11172 | 211 | ena | 228 |
| 20218 | Alteromonas haloplanktis 16S rRNA | D11221 | 206 | ena | 228 |
| 20218 | Alteromonas haloplanktis 16S rRNA | D11270 | 192 | ena | 228 |
| 20218 | A.haloplanktis 16S rRNA sequence | X67024 | 1464 | ena | 228 |
| 20218 | Pseudoalteromonas haloplanktis gene for 16S rRNA, partial sequence, strain: NBRC 102225 | AB681739 | 1461 | ena | 228 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoalteromonas haloplanktis ATCC 14393 | GCA_000238355 | contig | ncbi | 1117315 |
| 66792 | Pseudoalteromonas haloplanktis ATCC 14393 | 1117315.3 | wgs | patric | 1117315 |
| 66792 | Pseudoalteromonas haloplanktis ATCC 14393 | 2548876785 | draft | img | 1117315 |
| 66792 | Pseudoalteromonas haloplanktis CIP103197 | GCA_945859885 | scaffold | ncbi | 228 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.93 | no |
| flagellated | yes | 89.338 | no |
| gram-positive | no | 98.991 | no |
| anaerobic | no | 98.015 | no |
| aerobic | yes | 90.953 | no |
| halophile | no | 58.683 | no |
| spore-forming | no | 95.059 | no |
| glucose-util | yes | 89.54 | no |
| thermophile | no | 99.551 | no |
| glucose-ferment | no | 71.243 | no |
External links
@ref: 2423
culture collection no.: DSM 6060, ATCC 14393, NBRC 102225, JCM 20767, CIP 103197, CCUG 13451, IAM 12915, KMM 3660, LMG 2852, NCCB 71020, NCIMB 2084
straininfo link
- @ref: 81890
- straininfo: 863
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 7547295 | Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. | Gauthier G, Gauthier M, Christen R | Int J Syst Bacteriol | 10.1099/00207713-45-4-755 | 1995 | Base Sequence, DNA, Bacterial/*chemistry, DNA, Ribosomal/*chemistry, Gram-Negative Aerobic Bacteria/*classification, Molecular Sequence Data, Phylogeny | Genetics |
| Phylogeny | 11411675 | Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description. | Ivanova EP, Romanenko LA, Matte MH, Matte GR, Lysenko AM, Simidu U, Kita-Tsukamoto K, Sawabe T, Vysotskii MV, Frolova GM, Mikhailov V, Christen R, Colwell RR | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-1071 | 2001 | Alteromonas/*classification/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gammaproteobacteria/*classification/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics | Genetics |
| 15469016 | [Elucidation of structure of lipid A from the marine Gram-negative bacterium Pseudoalteromonas haloplanktis ATCC 14393T]. | Krasikova IN, Kapustina NV, Isakov VV, Gorshkova NM, Solov'eva TF | Bioorg Khim | 10.1023/b:rubi.0000037264.53294.da | 2004 | Deoxy Sugars/chemistry, Glucosamine/chemistry, Lipid A/*chemistry, Magnetic Resonance Spectroscopy, Pseudoalteromonas/*chemistry, Stereoisomerism | ||
| Metabolism | 27586234 | Cloning, Expression, and Characterization of a Novel L-Arabinose Isomerase from the Psychrotolerant Bacterium Pseudoalteromonas haloplanktis. | Xu W, Fan C, Zhang T, Jiang B, Mu W | Mol Biotechnol | 10.1007/s12033-016-9969-3 | 2016 | Aldose-Ketose Isomerases/chemistry/*genetics/*metabolism, Arabinose/*metabolism, Bacterial Proteins/chemistry/genetics/metabolism, Catalytic Domain, Cloning, Molecular/*methods, Escherichia coli/genetics, Galactose/metabolism, Hydrogen-Ion Concentration, Molecular Docking Simulation, Pseudoalteromonas/*enzymology/genetics, Recombinant Proteins/metabolism, Substrate Specificity, Temperature | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2423 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6060) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6060 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 42020 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14968 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 81890 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID863.1 | StrainInfo: A central database for resolving microbial strain identifiers |